Variant report

Variant	rs4902988
Chromosome Location	chr14:72594956-72594957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:72588996..72591752-chr14:72592712..72595173,2	MCF-7	breast:
2	chr14:72593195..72596208-chr14:72598976..72603730,4	MCF-7	breast:
3	chr14:72593788..72596146-chr20:43104582..43107038,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11158949	0.86[EUR][1000 genomes]
rs12434682	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879713	0.84[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs12880020	0.82[EUR][1000 genomes]
rs12880679	0.83[EUR][1000 genomes]
rs12881966	0.83[EUR][1000 genomes]
rs12883809	0.94[CHB][hapmap];0.86[ASN][1000 genomes]
rs12892488	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs12894109	0.80[ASN][1000 genomes]
rs12895415	0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs17107825	0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17179706	0.96[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2190630	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2238259	0.87[EUR][1000 genomes]
rs2238260	0.81[EUR][1000 genomes]
rs2238261	0.84[CHB][hapmap]
rs2283417	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2283418	0.80[EUR][1000 genomes]
rs2283419	0.82[ASN][1000 genomes]
rs3784052	0.85[CHB][hapmap];0.80[ASN][1000 genomes]
rs4902987	0.82[CEU][hapmap];0.87[EUR][1000 genomes]
rs67722975	0.87[EUR][1000 genomes]
rs7142272	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs981975	0.96[CEU][hapmap];0.81[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv902076	chr14:72565656-72632217	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902077	chr14:72576679-72632217	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv902078	chr14:72581575-72628433	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv902079	chr14:72583802-72632217	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv902080	chr14:72587872-72632217	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72584200-72600600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72584400-72595400	Weak transcription	Left Ventricle	heart
3	chr14:72592400-72600400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:72593800-72595400	Weak transcription	Pancreas	Pancrea
5	chr14:72594600-72595200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr14:72594600-72595400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr14:72594600-72595600	Enhancers	Primary hematopoietic stem cells	blood
8	chr14:72594600-72597200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr14:72594800-72595200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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