Variant report

Variant	rs7142272
Chromosome Location	chr14:72595888-72595889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12434682	0.89[YRI][hapmap]
rs17179706	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2190631	0.83[JPT][hapmap]
rs2239264	0.88[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs2332753	0.96[JPT][hapmap]
rs4899426	0.95[JPT][hapmap]
rs4902988	0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs7140634	0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs981975	0.86[JPT][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv902076	chr14:72565656-72632217	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902077	chr14:72576679-72632217	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv902078	chr14:72581575-72628433	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv902079	chr14:72583802-72632217	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv902080	chr14:72587872-72632217	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72584200-72600600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr14:72592400-72600400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:72594600-72597200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:72595200-72596000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:72595200-72596600	Enhancers	Colon Smooth Muscle	Colon
6	chr14:72595400-72596800	Enhancers	Gastric	stomach
7	chr14:72595400-72596800	Enhancers	Lung	lung
8	chr14:72595400-72596800	Enhancers	Rectal Smooth Muscle	rectum
9	chr14:72595600-72596000	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr14:72595600-72596400	Bivalent Enhancer	Liver	Liver
11	chr14:72595600-72596400	Weak transcription	Left Ventricle	heart
12	chr14:72595600-72596400	Weak transcription	Pancreas	Pancrea
13	chr14:72595800-72596600	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr14:72595800-72596800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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