Variant report

Variant	rs4904160
Chromosome Location	chr14:84613297-84613298
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10135627	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12100815	0.83[ASN][1000 genomes]
rs12889947	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12890538	0.90[ASN][1000 genomes]
rs12895378	0.85[EUR][1000 genomes]
rs1381621	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1462342	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1462343	0.95[ASN][1000 genomes]
rs1564058	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1766150	0.82[ASN][1000 genomes]
rs1779566	0.81[EUR][1000 genomes]
rs1971243	0.82[EUR][1000 genomes]
rs1971244	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs28597960	0.86[ASN][1000 genomes]
rs4899846	0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4899847	0.83[ASN][1000 genomes]
rs4904161	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4904165	0.82[ASN][1000 genomes]
rs6574774	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6574775	0.81[ASN][1000 genomes]
rs67901677	0.88[EUR][1000 genomes]
rs7147104	0.87[ASN][1000 genomes]
rs7148162	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7148532	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7158569	0.90[ASN][1000 genomes]
rs7159548	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160548	0.83[ASN][1000 genomes]
rs9285598	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9323742	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565376	chr14:84612088-84644822	Enhancers Weak transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4904160	FLRT2	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84613200-84613400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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