Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12170215	0.86[ASN][1000 genomes]
rs13056368	0.82[ASN][1000 genomes]
rs1997645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs479229	0.86[YRI][hapmap];0.90[AFR][1000 genomes]
rs483967	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs497150	0.87[CEU][hapmap]
rs498513	0.90[YRI][hapmap];0.88[AFR][1000 genomes]
rs570286	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57851794	0.80[ASN][1000 genomes]
rs713757	0.86[CHB][hapmap]
rs713818	0.80[ASN][1000 genomes]
rs736951	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs8135866	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8137063	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8137296	0.86[ASN][1000 genomes]
rs8139966	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs8141513	0.86[ASN][1000 genomes]
rs8142278	0.86[ASN][1000 genomes]
rs84312	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9306439	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs9613422	0.84[ASN][1000 genomes]
rs9613423	0.93[ASN][1000 genomes]
rs9613424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs9620683	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834166	chr22:27628570-27814359	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27715200-27727400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr22:27720000-27725400	Weak transcription	Brain Germinal Matrix	brain
3	chr22:27720200-27725000	Weak transcription	Ovary	ovary
4	chr22:27721400-27724800	Weak transcription	Fetal Brain Female	brain
5	chr22:27722000-27724600	Weak transcription	Fetal Brain Male	brain
6	chr22:27722000-27727600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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