Variant report

Variant	rs736951
Chromosome Location	chr22:27718705-27718706
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11090482	0.83[ASN][1000 genomes]
rs11912637	0.83[ASN][1000 genomes]
rs12165810	0.83[ASN][1000 genomes]
rs12165996	0.83[ASN][1000 genomes]
rs12170215	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13056368	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1997645	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs483967	0.96[ASN][1000 genomes]
rs490925	0.89[ASN][1000 genomes]
rs497150	0.81[CEU][hapmap]
rs516155	0.89[CEU][hapmap]
rs570286	0.93[ASN][1000 genomes]
rs57851794	0.83[ASN][1000 genomes]
rs71325232	0.83[ASN][1000 genomes]
rs71325233	0.83[ASN][1000 genomes]
rs713757	0.95[CEU][hapmap];0.86[CHB][hapmap]
rs713818	0.83[ASN][1000 genomes]
rs8135866	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8137063	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8137296	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8139966	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8141513	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs8142278	0.89[ASN][1000 genomes]
rs9306439	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9613422	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9613423	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9613424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9620683	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9620684	0.81[AFR][1000 genomes]
rs9625199	0.83[ASN][1000 genomes]
rs9625200	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413125	chr22:27404463-28121577	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv459860	chr22:27527005-28181436	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv588872	chr22:27527005-28181436	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	nsv834166	chr22:27628570-27814359	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:27714400-27719000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr22:27715000-27719600	Weak transcription	Ovary	ovary
3	chr22:27715200-27727400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr22:27715400-27719400	Weak transcription	Brain Germinal Matrix	brain
5	chr22:27718200-27722000	Enhancers	Fetal Brain Male	brain
6	chr22:27718600-27719400	Enhancers	Adipose Nuclei	Adipose
7	chr22:27718600-27720200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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