Variant report

Variant	rs4910863
Chromosome Location	chr11:3939122-3939123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10742189	0.81[EUR][1000 genomes]
rs10767706	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs10835301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11030224	0.93[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.92[EUR][1000 genomes]
rs11030254	0.80[ASN][1000 genomes]
rs11030264	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11030394	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17193797	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2923944	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2923945	0.92[CEU][hapmap];0.83[CHB][hapmap]
rs2923956	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2958713	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2958714	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2959056	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs2959075	0.81[CEU][hapmap]
rs2959081	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap]
rs34662040	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4910864	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7120938	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs7938196	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7945639	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv869701	chr11:3879297-3973762	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
8	nsv1051904	chr11:3903226-3939186	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1050077	chr11:3903226-3940726	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1043039	chr11:3903226-3955159	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3916600-3943800	Weak transcription	Fetal Stomach	stomach
2	chr11:3916600-3948800	Weak transcription	Aorta	Aorta
3	chr11:3924000-3950600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr11:3925800-3941000	Weak transcription	Right Ventricle	heart
5	chr11:3926600-3941000	Weak transcription	Small Intestine	intestine
6	chr11:3927200-3942600	Weak transcription	Spleen	Spleen
7	chr11:3927400-3941200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr11:3927600-3943600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:3928400-3940800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:3929200-3940800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:3929400-3950600	Weak transcription	Ovary	ovary
12	chr11:3930600-3940800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:3931400-3941000	Weak transcription	Adipose Nuclei	Adipose
14	chr11:3931600-3942600	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr11:3932200-3942800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:3932400-3944000	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:3932800-3941000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr11:3933200-3941000	Weak transcription	K562	blood
19	chr11:3934600-3940200	Enhancers	HepG2	liver
20	chr11:3934800-3951000	Weak transcription	Gastric	stomach
21	chr11:3935400-3942400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr11:3935400-3943000	Weak transcription	Fetal Lung	lung
23	chr11:3935400-3944000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:3935600-3942600	Enhancers	Primary B cells from peripheral blood	blood
25	chr11:3935600-3943200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr11:3935600-3943400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr11:3936000-3940200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:3936000-3942000	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr11:3936000-3943200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr11:3936000-3943600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
31	chr11:3936400-3939600	Enhancers	Fetal Thymus	thymus
32	chr11:3936400-3939800	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr11:3936400-3940800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr11:3936400-3940800	Weak transcription	NHDF-Ad	bronchial
35	chr11:3936600-3940400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr11:3936600-3941000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr11:3937000-3939600	Enhancers	Skeletal Muscle Male	skeletal muscle
38	chr11:3937400-3939600	Enhancers	Colon Smooth Muscle	Colon
39	chr11:3937400-3939800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:3937400-3942000	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr11:3937600-3940800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:3937600-3940800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:3937800-3950600	Weak transcription	Lung	lung
44	chr11:3938000-3939600	Enhancers	Thymus	Thymus
45	chr11:3938000-3939800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:3938000-3940200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr11:3938200-3940000	Enhancers	Psoas Muscle	Psoas
48	chr11:3938200-3940000	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr11:3938400-3940000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr11:3938400-3956400	Weak transcription	Dnd41	blood

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