Variant report

Variant	rs4916359
Chromosome Location	chr1:173431118-173431119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10753081	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10798282	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10912617	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10912618	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12140760	0.85[ASN][1000 genomes]
rs4255417	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4276950	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4325171	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4382766	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4611	0.85[ASN][1000 genomes]
rs4916220	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916355	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4916358	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4916361	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4916362	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4916363	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55654074	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6425231	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6425233	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6696012	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6702835	0.84[ASN][1000 genomes]
rs7314	0.85[ASN][1000 genomes]
rs7537938	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7540065	0.94[ASN][1000 genomes]
rs7556003	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9425718	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9425719	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9425723	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9425724	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831915	chr1:173268424-173482157	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:173419000-173432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:173419000-173439000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr1:173421000-173432200	Weak transcription	Fetal Brain Male	brain
4	chr1:173421400-173434000	Weak transcription	Psoas Muscle	Psoas
5	chr1:173423200-173432000	Weak transcription	A549	lung
6	chr1:173423400-173432600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr1:173423600-173432600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:173423800-173433400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:173423800-173436600	Weak transcription	NHDF-Ad	bronchial
10	chr1:173423800-173442400	Weak transcription	NH-A	brain
11	chr1:173425200-173442400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:173425400-173432200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr1:173426000-173431400	Weak transcription	Fetal Kidney	kidney
14	chr1:173427600-173431200	Strong transcription	Primary B cells from peripheral blood	blood
15	chr1:173428600-173431600	Strong transcription	Liver	Liver
16	chr1:173428800-173431200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:173428800-173431200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:173428800-173431400	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr1:173428800-173431400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:173428800-173431400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:173428800-173431400	Strong transcription	Brain Anterior Caudate	brain
22	chr1:173428800-173432000	Strong transcription	Primary T cells from cord blood	blood
23	chr1:173429000-173431200	Strong transcription	Primary B cells from cord blood	blood
24	chr1:173429000-173431200	Strong transcription	Muscle Satellite Cultured Cells	--
25	chr1:173429000-173431200	Strong transcription	Brain Substantia Nigra	brain
26	chr1:173429000-173431200	Strong transcription	Stomach Smooth Muscle	stomach
27	chr1:173429000-173431200	Strong transcription	HepG2	liver
28	chr1:173429000-173431200	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr1:173429000-173431400	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr1:173429000-173431400	Strong transcription	Spleen	Spleen
31	chr1:173429000-173431400	Strong transcription	HSMM	muscle
32	chr1:173429000-173431800	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr1:173429000-173432600	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr1:173429200-173431400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:173429400-173431200	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr1:173429400-173431400	Strong transcription	Dnd41	blood
37	chr1:173429400-173431800	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr1:173429400-173433600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr1:173429400-173439800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr1:173429600-173431200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr1:173429600-173431400	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr1:173429600-173431400	Strong transcription	Fetal Muscle Leg	muscle
43	chr1:173429600-173433400	Weak transcription	HMEC	breast
44	chr1:173429800-173431200	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr1:173429800-173431400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr1:173430000-173431200	Strong transcription	Primary hematopoietic stem cells	blood
47	chr1:173430000-173431200	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr1:173430200-173431200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr1:173430200-173431400	Strong transcription	K562	blood
50	chr1:173430400-173435000	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links