Variant report

Variant	rs4917785
Chromosome Location	chr10:99503821-99503822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99503209..99504783-chr10:99507206..99509576,2	MCF-7	breast:
2	chr10:99496561..99499053-chr10:99501574..99505641,4	MCF-7	breast:
3	chr10:99424940..99426723-chr10:99501991..99504090,2	K562	blood:
4	chr10:99495422..99498377-chr10:99503032..99505920,4	MCF-7	breast:
5	chr10:99502972..99504570-chr10:99627202..99630015,2	MCF-7	breast:
6	chr10:99500710..99504055-chr10:99516731..99520441,4	K562	blood:
7	chr10:99503362..99505706-chr10:99509652..99511798,2	K562	blood:
8	chr10:99494917..99500697-chr10:99501380..99508176,12	K562	blood:
9	chr10:99503150..99505719-chr10:99507042..99510106,3	MCF-7	breast:
10	chr10:99500286..99501793-chr10:99503721..99505250,2	MCF-7	breast:
11	chr10:99503270..99505522-chr10:99510241..99512787,2	MCF-7	breast:
12	chr10:99499187..99502135-chr10:99502777..99505222,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000269783	Chromatin interaction
ENSG00000155256	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10748707	1.00[CEU][hapmap]
rs10748708	0.83[ASN][1000 genomes]
rs10786367	0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10786368	0.96[CEU][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10786369	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10786370	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs10786371	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs10786372	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs10882993	0.83[JPT][hapmap]
rs10882995	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10882996	0.87[ASN][1000 genomes]
rs11189350	0.97[ASN][1000 genomes]
rs11189352	0.91[ASN][1000 genomes]
rs11189353	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs11189355	1.00[CHB][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs11189356	0.91[ASN][1000 genomes]
rs11189357	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs11189359	1.00[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11189360	0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs11189367	0.82[ASN][1000 genomes]
rs11189374	0.80[ASN][1000 genomes]
rs11189376	0.80[ASN][1000 genomes]
rs11591898	0.94[ASN][1000 genomes]
rs11597378	0.90[CHB][hapmap]
rs12412543	0.87[ASN][1000 genomes]
rs1253023	0.81[AMR][1000 genomes]
rs12569711	0.87[ASN][1000 genomes]
rs1538723	0.93[ASN][1000 genomes]
rs1981237	0.82[JPT][hapmap]
rs1981238	0.95[CHB][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2039826	0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs3750612	0.83[JPT][hapmap]
rs3750614	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs3750615	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs3814558	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs3814559	0.82[JPT][hapmap]
rs3814560	0.82[JPT][hapmap]
rs3818876	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3829137	0.82[CEU][hapmap]
rs4244329	0.82[JPT][hapmap]
rs4244330	0.83[ASN][1000 genomes]
rs4593946	0.84[CEU][hapmap]
rs4917783	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4917784	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7080894	0.82[JPT][hapmap]
rs7080953	0.81[JPT][hapmap]
rs7081361	0.82[ASN][1000 genomes]
rs7099540	0.95[CHB][hapmap];0.87[JPT][hapmap];0.88[ASN][1000 genomes]
rs7100453	0.80[ASN][1000 genomes]
rs7478323	0.83[ASN][1000 genomes]
rs7907679	0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7916454	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7922907	0.86[JPT][hapmap]
rs883324	0.83[JPT][hapmap]
rs946777	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs946778	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs946779	0.92[CEU][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs946780	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99497600-99522600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:99498000-99507800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:99498200-99507000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:99498200-99509000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:99498200-99520600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:99498400-99504000	Weak transcription	Small Intestine	intestine
7	chr10:99498400-99514800	Strong transcription	Fetal Stomach	stomach
8	chr10:99498400-99517600	Strong transcription	H1 Cell Line	embryonic stem cell
9	chr10:99498400-99519000	Strong transcription	Fetal Intestine Large	intestine
10	chr10:99498400-99519200	Strong transcription	Fetal Muscle Trunk	muscle
11	chr10:99498600-99504400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr10:99498600-99514800	Strong transcription	Fetal Muscle Leg	muscle
13	chr10:99498600-99517800	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:99498600-99518000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:99498600-99518000	Strong transcription	Fetal Thymus	thymus
16	chr10:99498600-99520200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:99498600-99520600	Strong transcription	Osteobl	bone
18	chr10:99498600-99522200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr10:99498600-99522400	Strong transcription	Duodenum Mucosa	Duodenum
20	chr10:99498600-99522400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr10:99498600-99523000	Strong transcription	Thymus	Thymus
22	chr10:99498600-99523600	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr10:99498600-99524800	Weak transcription	Fetal Brain Male	brain
24	chr10:99498800-99506000	Strong transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:99498800-99522400	Strong transcription	Dnd41	blood
26	chr10:99499000-99509600	Weak transcription	Psoas Muscle	Psoas
27	chr10:99499000-99517800	Strong transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:99499000-99518000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:99499200-99505800	Strong transcription	HUVEC	blood vessel
30	chr10:99499200-99517000	Strong transcription	HSMM	muscle
31	chr10:99499200-99518000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr10:99499200-99522800	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr10:99499200-99523400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
34	chr10:99499400-99519000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr10:99499400-99522000	Strong transcription	Stomach Smooth Muscle	stomach
36	chr10:99499400-99522400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr10:99499600-99504600	Strong transcription	Primary hematopoietic stem cells	blood
38	chr10:99499600-99519200	Strong transcription	Placenta	Placenta
39	chr10:99499800-99505600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:99499800-99518000	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr10:99500000-99523000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr10:99500200-99518000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:99500400-99522000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:99500600-99504000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr10:99500600-99506800	Weak transcription	Hela-S3	cervix
46	chr10:99500600-99523200	Strong transcription	Brain Germinal Matrix	brain
47	chr10:99500800-99507800	Weak transcription	Stomach Mucosa	stomach
48	chr10:99500800-99517800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:99500800-99518800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr10:99501000-99508000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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