Variant report

Variant	rs11597378
Chromosome Location	chr10:99552266-99552267
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99551871..99552427-chr10:99628961..99629463,2	K562	blood:
2	chr10:99551792..99552319-chr10:99609698..99610657,2	MCF-7	breast:
3	chr10:99550812..99553311-chr10:99554248..99556585,2	K562	blood:
4	chr10:99551408..99552738-chr10:99628911..99630531,8	MCF-7	breast:
5	chr10:99551392..99552453-chr10:99628753..99630092,20	MCF-7	breast:
6	chr10:99551776..99552400-chr10:99625042..99625903,2	K562	blood:
7	chr10:99551818..99552365-chr10:99673679..99674788,3	MCF-7	breast:
8	chr10:99551206..99553289-chr10:99627120..99629678,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000269783	Chromatin interaction
ENSG00000155265	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10786367	0.83[CHB][hapmap]
rs10786371	0.94[CHB][hapmap]
rs10786372	0.89[CHB][hapmap]
rs10786374	0.81[ASN][1000 genomes]
rs10882995	0.94[CHB][hapmap]
rs11189353	0.90[CHB][hapmap]
rs11189355	0.90[CHB][hapmap]
rs11189357	0.89[CHB][hapmap]
rs11189359	0.94[CHB][hapmap]
rs11189360	0.90[CHB][hapmap]
rs12780534	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1981238	0.89[CHB][hapmap]
rs2039826	0.94[CHB][hapmap]
rs2095957	0.82[ASN][1000 genomes]
rs2185364	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3750614	0.94[CHB][hapmap]
rs3750615	0.90[CHB][hapmap]
rs3814558	0.89[CHB][hapmap]
rs4359141	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4917784	0.94[CHB][hapmap]
rs7099540	0.90[CHB][hapmap]
rs7916454	0.89[CHB][hapmap]
rs946777	0.90[CHB][hapmap]
rs946778	0.94[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99548800-99556400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:99549000-99555000	Weak transcription	Left Ventricle	heart
3	chr10:99549200-99552800	Weak transcription	Right Atrium	heart
4	chr10:99549800-99553600	Enhancers	Pancreas	Pancrea
5	chr10:99551400-99552400	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr10:99551400-99552600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:99551400-99552600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr10:99551400-99552600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:99551400-99552600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:99551400-99553000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr10:99551400-99553400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr10:99551600-99552400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
13	chr10:99551600-99552400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr10:99551600-99552400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr10:99551600-99552400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:99551600-99552400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr10:99551600-99552800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr10:99551600-99553000	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr10:99551600-99553000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr10:99552000-99552400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:99552000-99556200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:99552000-99556400	Weak transcription	K562	blood
23	chr10:99552200-99555800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr10:99552200-99556000	Weak transcription	Fetal Thymus	thymus

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