Variant report

Variant	rs10786374
Chromosome Location	chr10:99549645-99549646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99548249..99550503-chr10:99630674..99633606,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10786371	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs10786372	0.86[CHB][hapmap]
rs10882995	0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs10882996	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10882997	0.85[EUR][1000 genomes]
rs10882998	0.81[CEU][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11189352	0.80[ASN][1000 genomes]
rs11189353	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs11189355	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs11189357	0.87[CHB][hapmap];0.86[JPT][hapmap]
rs11189359	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11189360	0.81[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11189361	0.82[EUR][1000 genomes]
rs11189362	0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs11189367	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11189374	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11189376	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11189377	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11597378	0.95[CHB][hapmap];0.81[ASN][1000 genomes]
rs12412543	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12569711	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12569757	0.91[ASN][1000 genomes]
rs12780534	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12783992	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1556971	0.81[EUR][1000 genomes]
rs1981237	0.84[EUR][1000 genomes]
rs1981238	0.81[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2010732	0.85[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2039826	0.95[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34283185	0.85[EUR][1000 genomes]
rs3750614	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs3750615	0.87[CHB][hapmap];0.87[JPT][hapmap];0.80[ASN][1000 genomes]
rs3814558	0.87[CHB][hapmap];0.84[JPT][hapmap]
rs3814559	0.82[EUR][1000 genomes]
rs3814560	0.82[EUR][1000 genomes]
rs4244329	0.83[EUR][1000 genomes]
rs4244330	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4917784	0.85[CHB][hapmap]
rs4917786	0.82[ASN][1000 genomes]
rs7080953	0.85[JPT][hapmap]
rs7081361	0.80[EUR][1000 genomes]
rs7094519	0.84[ASN][1000 genomes]
rs7099540	0.81[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7100453	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7478323	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7916164	0.81[EUR][1000 genomes]
rs7916454	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs7922907	0.80[JPT][hapmap]
rs946777	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs946778	0.86[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99543000-99551400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr10:99543200-99551400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:99544600-99550800	Weak transcription	Gastric	stomach
4	chr10:99548400-99549800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:99548800-99556400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:99549000-99551000	Weak transcription	A549	lung
7	chr10:99549000-99555000	Weak transcription	Left Ventricle	heart
8	chr10:99549200-99549800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:99549200-99549800	Enhancers	Duodenum Mucosa	Duodenum
10	chr10:99549200-99550000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:99549200-99551400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr10:99549200-99551400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr10:99549200-99551600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:99549200-99552000	Enhancers	K562	blood
15	chr10:99549200-99552800	Weak transcription	Right Atrium	heart
16	chr10:99549400-99551800	Enhancers	Fetal Intestine Large	intestine
17	chr10:99549400-99551800	Enhancers	Fetal Intestine Small	intestine
18	chr10:99549600-99549800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
19	chr10:99549600-99549800	Flanking Active TSS	Pancreas	Pancrea
20	chr10:99549600-99549800	Bivalent Enhancer	Stomach Mucosa	stomach

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