Variant report

Variant	rs10882998
Chromosome Location	chr10:99550794-99550795
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99550725..99552245-chr6:30882262..30884722,2	K562	blood:

Variant related genes	Relation type
ENSG00000137411	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10748709	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10786370	0.86[CHB][hapmap]
rs10786372	0.84[JPT][hapmap]
rs10786373	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10786374	0.82[ASN][1000 genomes]
rs10882993	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs10882997	0.90[ASN][1000 genomes]
rs11189355	0.82[JPT][hapmap]
rs11189357	0.82[JPT][hapmap]
rs11189362	0.87[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs12268814	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12569757	0.83[EUR][1000 genomes]
rs12780534	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12783992	0.89[ASN][1000 genomes]
rs1556971	0.87[ASN][1000 genomes]
rs1981237	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs2010732	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2027376	0.80[ASN][1000 genomes]
rs2095957	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2185364	0.81[ASN][1000 genomes]
rs34283185	0.88[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3750612	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs3814559	0.91[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs3814560	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs4244329	0.91[CHB][hapmap];0.83[ASN][1000 genomes]
rs4359141	0.81[ASN][1000 genomes]
rs4917786	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4919139	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7072751	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs7080894	0.91[CHB][hapmap]
rs7080953	0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs7081652	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7094519	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7907679	0.86[CHB][hapmap]
rs7910589	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7916164	0.84[ASN][1000 genomes]
rs7916593	0.80[ASN][1000 genomes]
rs7922907	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs883324	0.86[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs946777	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99543000-99551400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr10:99543200-99551400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr10:99544600-99550800	Weak transcription	Gastric	stomach
4	chr10:99548800-99556400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:99549000-99551000	Weak transcription	A549	lung
6	chr10:99549000-99555000	Weak transcription	Left Ventricle	heart
7	chr10:99549200-99551400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:99549200-99551400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr10:99549200-99551600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:99549200-99552000	Enhancers	K562	blood
11	chr10:99549200-99552800	Weak transcription	Right Atrium	heart
12	chr10:99549400-99551800	Enhancers	Fetal Intestine Large	intestine
13	chr10:99549400-99551800	Enhancers	Fetal Intestine Small	intestine
14	chr10:99549800-99551200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr10:99549800-99551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr10:99549800-99553600	Enhancers	Pancreas	Pancrea
17	chr10:99550000-99551600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:99550000-99552000	Weak transcription	Fetal Thymus	thymus
19	chr10:99550600-99551000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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