Variant report

Variant	rs10786373
Chromosome Location	chr10:99545937-99545938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10748709	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882997	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10882998	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11189361	0.87[ASN][1000 genomes]
rs11189362	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11189367	0.82[ASN][1000 genomes]
rs11189374	0.84[ASN][1000 genomes]
rs11189376	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11189377	0.81[ASN][1000 genomes]
rs11815012	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12268814	0.84[EUR][1000 genomes]
rs12569757	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12780534	0.85[EUR][1000 genomes]
rs12783992	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1556971	0.87[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1981237	0.92[ASN][1000 genomes]
rs2010732	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2027376	0.84[ASN][1000 genomes]
rs2039826	0.82[ASN][1000 genomes]
rs2095957	0.81[EUR][1000 genomes]
rs34283185	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3750612	0.84[ASN][1000 genomes]
rs3814559	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3814560	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4244329	0.92[ASN][1000 genomes]
rs4244330	0.82[ASN][1000 genomes]
rs4917786	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4919139	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7072751	0.98[ASN][1000 genomes]
rs7080894	0.88[ASN][1000 genomes]
rs7080953	0.86[ASN][1000 genomes]
rs7081652	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7094519	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7100453	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7478323	0.82[ASN][1000 genomes]
rs7910589	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7916164	0.90[ASN][1000 genomes]
rs7916593	0.84[ASN][1000 genomes]
rs7922907	0.86[ASN][1000 genomes]
rs883324	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99541000-99548600	Weak transcription	A549	lung
2	chr10:99541400-99546400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:99541800-99548400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:99541800-99548600	Weak transcription	Right Atrium	heart
5	chr10:99541800-99548800	Weak transcription	Right Ventricle	heart
6	chr10:99542000-99546200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:99542200-99546000	Weak transcription	Lung	lung
8	chr10:99542600-99546400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:99542600-99548400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:99542800-99547800	Weak transcription	Stomach Mucosa	stomach
11	chr10:99542800-99548400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr10:99542800-99548600	Weak transcription	Fetal Lung	lung
13	chr10:99543000-99547600	Weak transcription	K562	blood
14	chr10:99543000-99548400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:99543000-99551400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr10:99543200-99548400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:99543200-99548400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr10:99543200-99548400	Weak transcription	Left Ventricle	heart
19	chr10:99543200-99551400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:99543800-99547200	Enhancers	Fetal Intestine Large	intestine
21	chr10:99544000-99548400	Weak transcription	Brain Substantia Nigra	brain
22	chr10:99544000-99548600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr10:99544600-99546000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:99544600-99546000	Enhancers	Fetal Intestine Small	intestine
25	chr10:99544600-99550800	Weak transcription	Gastric	stomach
26	chr10:99545000-99546200	Enhancers	HMEC	breast
27	chr10:99545000-99546400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:99545200-99546000	Flanking Active TSS	NHEK	skin
29	chr10:99545200-99546200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr10:99545400-99546000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr10:99545600-99547600	Flanking Active TSS	Pancreas	Pancrea
32	chr10:99545800-99547000	Bivalent Enhancer	HepG2	liver

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