Variant report

Variant	rs7072751
Chromosome Location	chr10:99541104-99541105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99524037..99526896-chr10:99538605..99541496,2	MCF-7	breast:
2	chr10:99521353..99523999-chr10:99539664..99542040,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10748709	0.99[ASN][1000 genomes]
rs10786370	0.91[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap]
rs10786373	0.98[ASN][1000 genomes]
rs10882993	0.87[CHB][hapmap];0.88[CHD][hapmap];0.91[JPT][hapmap]
rs10882997	1.00[ASN][1000 genomes]
rs10882998	0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11189357	0.81[JPT][hapmap]
rs11189361	0.85[ASN][1000 genomes]
rs11189362	0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11189367	0.80[ASN][1000 genomes]
rs11189374	0.82[ASN][1000 genomes]
rs11189376	0.82[ASN][1000 genomes]
rs11189377	0.83[ASN][1000 genomes]
rs11815012	0.84[ASN][1000 genomes]
rs12569757	0.84[ASN][1000 genomes]
rs12783992	0.99[ASN][1000 genomes]
rs1556971	0.97[ASN][1000 genomes]
rs1981237	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs1981238	0.81[JPT][hapmap]
rs2010732	0.90[ASN][1000 genomes]
rs2027376	0.86[ASN][1000 genomes]
rs2039826	0.82[CHD][hapmap];0.83[JPT][hapmap]
rs34283185	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3750612	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs3750615	0.82[JPT][hapmap]
rs3814559	0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs3814560	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4244329	0.95[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4917786	0.94[ASN][1000 genomes]
rs4919139	0.95[CHB][hapmap];0.97[ASN][1000 genomes]
rs7080894	0.95[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs7080953	0.95[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7081652	0.97[ASN][1000 genomes]
rs7094519	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7100453	0.82[ASN][1000 genomes]
rs7907679	0.91[CHB][hapmap];0.86[CHD][hapmap];0.82[JPT][hapmap]
rs7910589	0.99[ASN][1000 genomes]
rs7916164	0.92[ASN][1000 genomes]
rs7916593	0.86[ASN][1000 genomes]
rs7922907	0.91[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs883324	0.91[CHB][hapmap];0.90[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99533600-99541400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:99537000-99545600	Enhancers	Pancreas	Pancrea
3	chr10:99537200-99542600	Enhancers	Fetal Thymus	thymus
4	chr10:99537600-99541200	Weak transcription	Fetal Intestine Large	intestine
5	chr10:99538600-99541400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:99539400-99541400	Enhancers	Fetal Muscle Trunk	muscle
7	chr10:99539600-99541400	Enhancers	Primary T cells from cord blood	blood
8	chr10:99539600-99543200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:99539800-99541200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:99539800-99541400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr10:99539800-99543000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr10:99539800-99543000	Enhancers	K562	blood
13	chr10:99540000-99541600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:99540000-99541800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:99540000-99541800	Enhancers	Ovary	ovary
16	chr10:99540000-99542000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:99540000-99542600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr10:99540000-99542800	Enhancers	Primary hematopoietic stem cells	blood
19	chr10:99540000-99542800	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr10:99540000-99543000	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr10:99540000-99543000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:99540200-99541200	Enhancers	Fetal Stomach	stomach
23	chr10:99540200-99541400	Enhancers	Duodenum Mucosa	Duodenum
24	chr10:99540200-99541600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr10:99540200-99541600	Enhancers	Duodenum Smooth Muscle	Duodenum
26	chr10:99540200-99541800	Enhancers	Adipose Nuclei	Adipose
27	chr10:99540200-99541800	Enhancers	Right Atrium	heart
28	chr10:99540200-99542000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
29	chr10:99540200-99542000	Enhancers	Brain Hippocampus Middle	brain
30	chr10:99540200-99542400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
31	chr10:99540200-99542600	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr10:99540200-99542800	Enhancers	Fetal Lung	lung
33	chr10:99540200-99543200	Enhancers	NHEK	skin
34	chr10:99540400-99541400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr10:99540400-99541800	Enhancers	Brain Anterior Caudate	brain
36	chr10:99540400-99542000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr10:99540400-99542400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:99540400-99542600	Enhancers	Fetal Brain Male	brain
39	chr10:99540400-99542800	Enhancers	Fetal Muscle Leg	muscle
40	chr10:99540400-99543200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr10:99540400-99544600	Genic enhancers	Fetal Intestine Small	intestine
42	chr10:99540600-99541400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:99540600-99541400	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr10:99540600-99541400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
45	chr10:99540600-99541400	Enhancers	Fetal Kidney	kidney
46	chr10:99540600-99541600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr10:99540600-99542000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr10:99540600-99542000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:99540600-99542200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr10:99540600-99542200	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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