Variant report

Variant	rs4919139
Chromosome Location	chr10:99532860-99532861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr10:99532711-99532939	HEK293-T-REx	kidney:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99532050..99535019-chr10:99556525..99559410,2	K562	blood:

Variant related genes	Relation type
SFRP5	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10748709	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10786370	0.87[CHB][hapmap]
rs10786373	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10882993	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs10882997	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10882998	0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11189361	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11189362	0.87[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11189367	0.83[ASN][1000 genomes]
rs11189376	0.83[EUR][1000 genomes]
rs11189377	0.80[ASN][1000 genomes]
rs11815012	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12268814	0.85[EUR][1000 genomes]
rs12569757	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12783992	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1556971	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981237	0.83[CEU][hapmap];0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2010732	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2027376	0.88[ASN][1000 genomes]
rs2039826	0.83[CEU][hapmap];0.82[ASN][1000 genomes]
rs2095957	0.81[EUR][1000 genomes]
rs34283185	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3750612	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs3814559	0.92[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3814560	0.83[CEU][hapmap];0.91[CHB][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244329	0.83[CEU][hapmap];0.91[CHB][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4244330	0.82[ASN][1000 genomes]
rs4917786	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7072751	0.97[ASN][1000 genomes]
rs7080894	0.91[CHB][hapmap];0.89[ASN][1000 genomes]
rs7080953	0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7081652	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7094519	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7478323	0.82[ASN][1000 genomes]
rs7907679	0.87[CHB][hapmap]
rs7910589	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7916164	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7916593	0.88[ASN][1000 genomes]
rs7922907	0.87[CHB][hapmap];0.86[ASN][1000 genomes]
rs883324	0.87[CHB][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3340017	chr10:99530387-99533135	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3390726	chr10:99530862-99532860	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99531800-99533400	Bivalent Enhancer	Fetal Thymus	thymus
2	chr10:99532000-99533600	Bivalent Enhancer	Fetal Heart	heart
3	chr10:99532000-99533600	Bivalent Enhancer	Fetal Intestine Large	intestine
4	chr10:99532000-99540200	Weak transcription	Right Atrium	heart
5	chr10:99532200-99533200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
6	chr10:99532200-99533600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr10:99532400-99533000	Enhancers	K562	blood
8	chr10:99532400-99533600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:99532400-99533600	Bivalent Enhancer	Fetal Intestine Small	intestine
10	chr10:99532600-99533000	Enhancers	Pancreas	Pancrea
11	chr10:99532600-99533000	Bivalent Enhancer	HepG2	liver
12	chr10:99532600-99533600	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
13	chr10:99532800-99533000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
14	chr10:99532800-99533000	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
15	chr10:99532800-99533800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
16	chr10:99532800-99541000	Weak transcription	Gastric	stomach

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