Variant report

Variant	rs7094519
Chromosome Location	chr10:99547286-99547287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10748709	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10786373	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10786374	0.84[ASN][1000 genomes]
rs10882997	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10882998	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11189361	0.84[ASN][1000 genomes]
rs11189362	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11189376	0.85[EUR][1000 genomes]
rs11189377	0.82[ASN][1000 genomes]
rs12268814	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12569757	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12780534	0.83[ASN][1000 genomes]
rs12783992	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1556971	0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1981237	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2010732	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2027376	0.81[ASN][1000 genomes]
rs2095957	0.82[EUR][1000 genomes]
rs34283185	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3750612	0.81[ASN][1000 genomes]
rs3814559	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3814560	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4244329	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4917786	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4919139	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7072751	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7080894	0.81[ASN][1000 genomes]
rs7080953	0.83[ASN][1000 genomes]
rs7081652	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7910589	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7916164	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7916593	0.81[ASN][1000 genomes]
rs883324	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99541000-99548600	Weak transcription	A549	lung
2	chr10:99541800-99548400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:99541800-99548600	Weak transcription	Right Atrium	heart
4	chr10:99541800-99548800	Weak transcription	Right Ventricle	heart
5	chr10:99542600-99548400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:99542800-99547800	Weak transcription	Stomach Mucosa	stomach
7	chr10:99542800-99548400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr10:99542800-99548600	Weak transcription	Fetal Lung	lung
9	chr10:99543000-99547600	Weak transcription	K562	blood
10	chr10:99543000-99548400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:99543000-99551400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:99543200-99548400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:99543200-99548400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr10:99543200-99548400	Weak transcription	Left Ventricle	heart
15	chr10:99543200-99551400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr10:99544000-99548400	Weak transcription	Brain Substantia Nigra	brain
17	chr10:99544000-99548600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr10:99544600-99550800	Weak transcription	Gastric	stomach
19	chr10:99545600-99547600	Flanking Active TSS	Pancreas	Pancrea
20	chr10:99546400-99548400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:99546400-99548400	Weak transcription	NHEK	skin
22	chr10:99546400-99548600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:99546600-99548600	Weak transcription	Lung	lung
24	chr10:99546800-99547400	Active TSS	Fetal Intestine Small	intestine
25	chr10:99546800-99547600	Enhancers	Duodenum Mucosa	Duodenum
26	chr10:99547200-99548200	Flanking Active TSS	Fetal Intestine Large	intestine

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