Variant report

Variant	rs2095957
Chromosome Location	chr10:99553055-99553056
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99550812..99553311-chr10:99554248..99556585,2	K562	blood:
2	chr10:99551206..99553289-chr10:99627120..99629678,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269783	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10748709	0.85[EUR][1000 genomes]
rs10786373	0.81[EUR][1000 genomes]
rs10882998	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11597378	0.82[ASN][1000 genomes]
rs12268814	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2010732	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2185364	0.99[ASN][1000 genomes]
rs4359141	0.99[ASN][1000 genomes]
rs4917786	0.84[EUR][1000 genomes]
rs4919139	0.81[EUR][1000 genomes]
rs7081652	0.82[EUR][1000 genomes]
rs7094519	0.82[EUR][1000 genomes]
rs7910589	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99548800-99556400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:99549000-99555000	Weak transcription	Left Ventricle	heart
3	chr10:99549800-99553600	Enhancers	Pancreas	Pancrea
4	chr10:99551400-99553400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr10:99552000-99556200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:99552000-99556400	Weak transcription	K562	blood
7	chr10:99552200-99555800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr10:99552200-99556000	Weak transcription	Fetal Thymus	thymus
9	chr10:99552400-99554800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr10:99552400-99555000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:99552400-99555200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:99552400-99555400	Weak transcription	Primary T cells from cord blood	blood
13	chr10:99552400-99555600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr10:99552600-99554800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr10:99552600-99555800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr10:99552600-99560800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr10:99552800-99555000	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr10:99552800-99555800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr10:99553000-99553400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:99553000-99553400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr10:99553000-99555000	Weak transcription	Primary T helper cells fromperipheralblood	blood

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