Variant report
| Variant | rs492046 |
|---|---|
| Chromosome Location | chr15:43606650-43606651 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:43606393..43608534-chr15:43619037..43620672,2 | MCF-7 | breast: | |
| 2 | chr15:43605237..43606957-chr15:43618740..43620246,2 | K562 | blood: | |
| 3 | chr15:43601347..43604059-chr15:43604957..43607344,2 | K562 | blood: | |
| 4 | chr15:43606648..43611125-chr15:43620820..43625585,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168803 | Chromatin interaction |
| ENSG00000168806 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1814540 | 1.00[EUR][1000 genomes] |
| rs2037393 | 1.00[EUR][1000 genomes] |
| rs2245161 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2247734 | 0.94[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs2249948 | 1.00[EUR][1000 genomes] |
| rs2264048 | 1.00[EUR][1000 genomes] |
| rs2264051 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2412751 | 1.00[EUR][1000 genomes] |
| rs2444031 | 1.00[EUR][1000 genomes] |
| rs2444248 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2601019 | 1.00[AMR][1000 genomes] |
| rs28370962 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs509037 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs509197 | 1.00[EUR][1000 genomes] |
| rs545430 | 0.88[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs555252 | 0.94[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs558010 | 1.00[EUR][1000 genomes] |
| rs559805 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs567249 | 1.00[AMR][1000 genomes] |
| rs573201 | 0.88[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs575304 | 0.81[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59083674 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs689735 | 1.00[EUR][1000 genomes] |
| rs690262 | 0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7173990 | 0.89[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74009133 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs933942 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1044522 | chr15:43115348-43658417 | Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 47 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044508 | chr15:43270637-43658417 | Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 43 gene(s) | inside rSNPs | diseases |
| 3 | nsv534649 | chr15:43591116-43851142 | Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 45 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
