Variant report

Variant	rs4923923
Chromosome Location	chr15:42354134-42354135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42352029..42354148-chr15:42359763..42361344,2	K562	blood:
2	chr15:42353361..42355428-chr15:42357307..42359309,2	K562	blood:
3	chr15:42352047..42353613-chr15:42354115..42356872,2	K562	blood:
4	chr15:42353338..42356078-chr15:42687928..42689518,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11070356	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12148273	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17690109	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17690827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17690899	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17691153	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17747505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17748059	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17748132	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1993069	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2412656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28568280	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4923922	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4923924	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4923925	0.97[EUR][1000 genomes]
rs4923926	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4923927	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4923928	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4924608	1.00[AFR][1000 genomes]
rs4924609	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4924611	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4924614	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4924615	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4924616	0.97[EUR][1000 genomes]
rs4924617	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4924619	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4924620	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7162019	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7165458	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7165460	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7166026	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7166093	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7166111	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7166789	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7168863	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7173686	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7176443	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7176459	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7177034	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs7180420	0.97[EUR][1000 genomes]
rs750051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs750052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs755599	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8029713	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv471683	chr15:42334375-42502982	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1043641	chr15:42336584-42381240	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv904131	chr15:42343794-42390223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv904132	chr15:42343794-42398046	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42343000-42357600	Weak transcription	Lung	lung
2	chr15:42349400-42356200	Weak transcription	Right Atrium	heart
3	chr15:42349600-42358200	Weak transcription	Brain Anterior Caudate	brain
4	chr15:42349800-42357000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:42350000-42357200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:42350000-42357200	Weak transcription	Spleen	Spleen
7	chr15:42350400-42355200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr15:42350400-42362600	Weak transcription	Gastric	stomach
9	chr15:42350600-42357200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:42350600-42358400	Weak transcription	NHEK	skin
11	chr15:42350800-42355800	Weak transcription	HMEC	breast
12	chr15:42350800-42358400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:42352000-42356800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:42352200-42357200	Enhancers	HepG2	liver
15	chr15:42352600-42357200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:42353000-42358400	Weak transcription	Stomach Mucosa	stomach
17	chr15:42353200-42355400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:42353200-42355800	Weak transcription	Placenta	Placenta
19	chr15:42353400-42358400	Weak transcription	Pancreas	Pancrea
20	chr15:42353400-42358400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:42353800-42358600	Weak transcription	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links