Variant report

Variant	rs7180420
Chromosome Location	chr15:42372872-42372873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42283450..42285988-chr15:42370999..42373480,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11070356	0.87[EUR][1000 genomes]
rs12148273	0.87[EUR][1000 genomes]
rs17690109	0.87[EUR][1000 genomes]
rs17690827	0.99[EUR][1000 genomes]
rs17690899	0.99[EUR][1000 genomes]
rs17691153	1.00[EUR][1000 genomes]
rs17747505	0.99[EUR][1000 genomes]
rs17748059	0.87[EUR][1000 genomes]
rs17748132	0.87[EUR][1000 genomes]
rs1993069	0.87[EUR][1000 genomes]
rs2412656	0.99[EUR][1000 genomes]
rs28568280	0.87[EUR][1000 genomes]
rs4923922	0.82[EUR][1000 genomes]
rs4923923	0.97[EUR][1000 genomes]
rs4923924	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4923925	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4923926	0.89[EUR][1000 genomes]
rs4923927	0.89[EUR][1000 genomes]
rs4923928	0.87[EUR][1000 genomes]
rs4924611	0.87[EUR][1000 genomes]
rs4924614	0.97[EUR][1000 genomes]
rs4924615	1.00[EUR][1000 genomes]
rs4924616	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4924617	1.00[EUR][1000 genomes]
rs4924619	0.87[EUR][1000 genomes]
rs4924620	0.87[EUR][1000 genomes]
rs7162019	0.87[EUR][1000 genomes]
rs7165458	0.87[EUR][1000 genomes]
rs7165460	0.87[EUR][1000 genomes]
rs7166026	1.00[EUR][1000 genomes]
rs7166093	0.83[EUR][1000 genomes]
rs7166111	1.00[EUR][1000 genomes]
rs7166789	0.87[EUR][1000 genomes]
rs7168863	0.99[EUR][1000 genomes]
rs7173686	1.00[EUR][1000 genomes]
rs7176443	0.87[EUR][1000 genomes]
rs7176459	0.87[EUR][1000 genomes]
rs7177034	0.87[EUR][1000 genomes]
rs750051	0.97[EUR][1000 genomes]
rs750052	0.99[EUR][1000 genomes]
rs755599	0.97[EUR][1000 genomes]
rs8029713	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv1035998	chr15:42098896-42434254	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv471683	chr15:42334375-42502982	Enhancers Bivalent Enhancer Genic enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1043641	chr15:42336584-42381240	Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv904131	chr15:42343794-42390223	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
9	nsv904132	chr15:42343794-42398046	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
10	nsv832985	chr15:42371482-42564966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42363600-42375800	Weak transcription	Esophagus	oesophagus
2	chr15:42369800-42385000	Weak transcription	Right Atrium	heart
3	chr15:42371600-42373200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr15:42371600-42373400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr15:42371600-42373400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:42371600-42373400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:42371800-42373000	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:42371800-42373400	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr15:42371800-42373400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:42371800-42373600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:42371800-42380800	Weak transcription	Pancreas	Pancrea
12	chr15:42372000-42373200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr15:42372200-42373000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr15:42372200-42373000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr15:42372400-42373000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:42372400-42373000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr15:42372400-42373000	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr15:42372400-42373200	Enhancers	NHEK	skin
19	chr15:42372400-42373600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:42372600-42373200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:42372600-42373400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr15:42372600-42373400	Weak transcription	Fetal Thymus	thymus
23	chr15:42372600-42373800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:42372600-42376400	Weak transcription	Right Ventricle	heart
25	chr15:42372800-42373200	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr15:42372800-42373200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
27	chr15:42372800-42373200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr15:42372800-42373400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:42372800-42373600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:42372800-42373600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr15:42372800-42373800	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:42372800-42383000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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