Variant report

Variant	rs4923994
Chromosome Location	chr3:118287231-118287232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1288094	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1669854	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1901536	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1901539	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2167594	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2254602	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2444007	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2444011	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2462044	1.00[AMR][1000 genomes]
rs2468072	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2470916	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2960207	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3100129	1.00[AMR][1000 genomes]
rs3100130	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3100144	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3100145	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3110178	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3110179	1.00[AFR][1000 genomes]
rs3110180	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3110673	1.00[AMR][1000 genomes]
rs3110674	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34359070	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34387827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34708122	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4625702	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4923992	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829690	chr3:118205361-118378010	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:118268000-118305800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:118271800-118291200	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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