Variant report

Variant	rs4924696
Chromosome Location	chr15:43051179-43051180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11070378	0.85[CEU][hapmap]
rs11854550	0.84[CEU][hapmap]
rs2139655	0.83[CEU][hapmap]
rs6493065	0.92[CEU][hapmap];0.83[TSI][hapmap]
rs7181238	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs8024266	0.92[CEU][hapmap]
rs9920092	0.85[CEU][hapmap]
rs9920562	0.85[CEU][hapmap]
rs9920624	0.85[CEU][hapmap]
rs9920935	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv427959	chr15:42931181-43207353	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv457122	chr15:42948862-43062548	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv569238	chr15:42948862-43062548	Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv977054	chr15:43015821-43171355	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4924696	C15orf62	cis	cerebellum	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43029400-43051200	Weak transcription	Spleen	Spleen
2	chr15:43029800-43051200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:43029800-43051200	Weak transcription	Esophagus	oesophagus
4	chr15:43029800-43051200	Weak transcription	Gastric	stomach
5	chr15:43029800-43051400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:43029800-43071000	Weak transcription	Pancreas	Pancrea
7	chr15:43030000-43051400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr15:43030000-43051600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:43030000-43053200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:43030000-43053200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:43030000-43053800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr15:43030000-43066200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr15:43030000-43067200	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr15:43030000-43093600	Weak transcription	Colonic Mucosa	Colon
15	chr15:43030200-43052800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr15:43038200-43055200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:43038400-43051200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:43038400-43051200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:43038400-43067400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:43044400-43051200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:43044600-43056000	Weak transcription	Fetal Lung	lung
22	chr15:43044800-43052800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr15:43044800-43053000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr15:43044800-43053000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr15:43044800-43053200	Weak transcription	Osteobl	bone
26	chr15:43044800-43053600	Weak transcription	Aorta	Aorta
27	chr15:43044800-43054200	Weak transcription	Fetal Brain Male	brain
28	chr15:43044800-43066400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr15:43045000-43065600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:43045200-43051600	Weak transcription	Fetal Brain Female	brain
31	chr15:43045400-43051200	Weak transcription	Lung	lung
32	chr15:43045400-43051400	Weak transcription	Fetal Intestine Large	intestine
33	chr15:43045400-43051400	Weak transcription	HSMMtube	muscle
34	chr15:43045400-43051600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr15:43045400-43051800	Weak transcription	Brain Angular Gyrus	brain
36	chr15:43045400-43052600	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:43045400-43052800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:43045400-43053000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr15:43045400-43053200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr15:43045400-43062800	Weak transcription	Colon Smooth Muscle	Colon
41	chr15:43045400-43068000	Weak transcription	Fetal Heart	heart
42	chr15:43045600-43051200	Weak transcription	Placenta	Placenta
43	chr15:43045600-43051600	Weak transcription	Brain Germinal Matrix	brain
44	chr15:43045600-43053000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr15:43045600-43074400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:43045800-43051200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr15:43045800-43051200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:43045800-43051200	Weak transcription	Left Ventricle	heart
49	chr15:43045800-43051400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr15:43045800-43064800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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