Variant report

Variant	rs492560
Chromosome Location	chr13:110919976-110919977
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110919933..110922792-chr13:110926003..110927619,2	K562	blood:
2	chr13:110919933..110922035-chr13:110926119..110928114,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11842143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58108667	0.91[ASN][1000 genomes]
rs620908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs621006	1.00[CEU][hapmap]
rs73615455	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110911200-110924000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:110912200-110924000	Enhancers	Left Ventricle	heart
3	chr13:110913400-110920200	Enhancers	Fetal Heart	heart
4	chr13:110914000-110922600	Enhancers	Right Atrium	heart
5	chr13:110915200-110920000	Enhancers	HUVEC	blood vessel
6	chr13:110915200-110936200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:110915400-110920000	Enhancers	Colon Smooth Muscle	Colon
8	chr13:110915600-110935800	Weak transcription	Gastric	stomach
9	chr13:110916200-110921400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:110916400-110921000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:110916400-110921400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr13:110916400-110921400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr13:110916400-110921400	Enhancers	Spleen	Spleen
14	chr13:110916600-110920200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr13:110916600-110922200	Weak transcription	HSMM	muscle
16	chr13:110916600-110935800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr13:110916800-110924800	Weak transcription	HSMMtube	muscle
18	chr13:110916800-110927800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr13:110917000-110922600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:110917200-110921600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr13:110917200-110921600	Genic enhancers	Fetal Muscle Trunk	muscle
22	chr13:110917200-110924000	Genic enhancers	Fetal Muscle Leg	muscle
23	chr13:110917400-110939000	Weak transcription	Fetal Intestine Large	intestine
24	chr13:110917800-110920600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr13:110918000-110921000	Weak transcription	Ovary	ovary
26	chr13:110918000-110924600	Weak transcription	Fetal Kidney	kidney
27	chr13:110918200-110920000	Enhancers	Aorta	Aorta
28	chr13:110918200-110920600	Enhancers	Pancreas	Pancrea
29	chr13:110918200-110935800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr13:110918400-110920000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr13:110918400-110920000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr13:110918400-110921200	Enhancers	Fetal Lung	lung
33	chr13:110918600-110920000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr13:110918600-110922600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr13:110918600-110924000	Enhancers	Rectal Smooth Muscle	rectum
36	chr13:110918600-110924200	Enhancers	Right Ventricle	heart
37	chr13:110918800-110920000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr13:110918800-110930000	Weak transcription	Fetal Intestine Small	intestine
39	chr13:110919000-110920400	Enhancers	Adipose Nuclei	Adipose
40	chr13:110919000-110920400	Enhancers	Stomach Smooth Muscle	stomach
41	chr13:110919200-110920000	Enhancers	NHLF	lung
42	chr13:110919200-110921000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr13:110919200-110921000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr13:110919200-110921400	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr13:110919200-110928400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr13:110919400-110920000	Enhancers	Fetal Brain Male	brain
47	chr13:110919400-110921000	Weak transcription	NH-A	brain
48	chr13:110919600-110920400	Weak transcription	Fetal Brain Female	brain
49	chr13:110919600-110920400	Weak transcription	NHDF-Ad	bronchial
50	chr13:110919600-110921000	Weak transcription	Brain Hippocampus Middle	brain

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