Variant report

Variant	rs73615455
Chromosome Location	chr13:110924129-110924130
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11842143	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1888002	0.87[EUR][1000 genomes]
rs492560	0.87[ASN][1000 genomes]
rs58108667	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58988373	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs620908	0.91[ASN][1000 genomes]
rs7987982	0.87[EUR][1000 genomes]
rs7991407	0.87[EUR][1000 genomes]
rs7994104	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9588132	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038914	chr13:110860219-111190104	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110915200-110936200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr13:110915600-110935800	Weak transcription	Gastric	stomach
3	chr13:110916600-110935800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr13:110916800-110924800	Weak transcription	HSMMtube	muscle
5	chr13:110916800-110927800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr13:110917400-110939000	Weak transcription	Fetal Intestine Large	intestine
7	chr13:110918000-110924600	Weak transcription	Fetal Kidney	kidney
8	chr13:110918200-110935800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:110918600-110924200	Enhancers	Right Ventricle	heart
10	chr13:110918800-110930000	Weak transcription	Fetal Intestine Small	intestine
11	chr13:110919200-110928400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr13:110919600-110927200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr13:110919600-110928600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:110919600-110938600	Weak transcription	HMEC	breast
15	chr13:110919800-110929800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr13:110919800-110937600	Weak transcription	NHEK	skin
17	chr13:110920000-110924600	Weak transcription	HUVEC	blood vessel
18	chr13:110920000-110929400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:110920200-110951200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:110920600-110934200	Weak transcription	Pancreas	Pancrea
21	chr13:110921000-110926000	Strong transcription	NH-A	brain
22	chr13:110921000-110929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr13:110921200-110927000	Weak transcription	NHDF-Ad	bronchial
24	chr13:110921200-110927200	Strong transcription	Osteobl	bone
25	chr13:110921200-110929800	Weak transcription	Fetal Lung	lung
26	chr13:110921400-110924800	Weak transcription	Fetal Stomach	stomach
27	chr13:110921400-110925000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr13:110921400-110926600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr13:110921400-110926600	Weak transcription	Spleen	Spleen
30	chr13:110921400-110935800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr13:110921400-110935800	Weak transcription	Esophagus	oesophagus
32	chr13:110922000-110924200	Enhancers	Stomach Smooth Muscle	stomach
33	chr13:110922200-110935800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr13:110922400-110926800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr13:110922600-110924200	Enhancers	Adipose Nuclei	Adipose
36	chr13:110922600-110924400	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr13:110922600-110926600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr13:110922600-110934000	Weak transcription	HSMM	muscle
39	chr13:110922600-110934200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr13:110923000-110925200	Enhancers	Aorta	Aorta
41	chr13:110923200-110924400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr13:110923200-110924800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr13:110923200-110925800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:110923400-110924600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr13:110923400-110926800	Weak transcription	NHLF	lung
46	chr13:110923400-110931200	Weak transcription	Lung	lung
47	chr13:110923600-110924400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr13:110923600-110924800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr13:110923800-110924600	Weak transcription	Ovary	ovary
50	chr13:110923800-110924800	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links