Variant report

Variant	rs4927262
Chromosome Location	chr1:56191580-56191581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11206661	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4111070	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6666494	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56185200-56191800	Weak transcription	Aorta	Aorta
2	chr1:56186400-56192200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr1:56186400-56207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:56186600-56192200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr1:56186800-56192400	Weak transcription	Fetal Stomach	stomach
6	chr1:56187800-56192000	Weak transcription	Fetal Muscle Leg	muscle
7	chr1:56187800-56192400	Enhancers	HSMM	muscle
8	chr1:56188600-56191600	Enhancers	NH-A	brain
9	chr1:56188600-56193400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:56188800-56192400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:56189400-56192200	Enhancers	HSMMtube	muscle
12	chr1:56189400-56193400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:56189600-56192400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:56189600-56192400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:56190200-56192400	Enhancers	Hela-S3	cervix
16	chr1:56190400-56193200	Enhancers	A549	lung
17	chr1:56190400-56193400	Enhancers	HMEC	breast
18	chr1:56190600-56191600	Enhancers	NHLF	lung
19	chr1:56191200-56192200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:56191200-56192200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:56191200-56192400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr1:56191200-56192400	Weak transcription	Ovary	ovary
23	chr1:56191200-56192600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:56191200-56193200	Enhancers	Osteobl	bone
25	chr1:56191200-56193800	Enhancers	Muscle Satellite Cultured Cells	--
26	chr1:56191400-56191800	Weak transcription	NHDF-Ad	bronchial

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