Variant report

Variant	rs6666494
Chromosome Location	chr1:56193382-56193383
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4111070	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4927262	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829926	chr1:56188492-56360745	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56186400-56207600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56188600-56193400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr1:56189400-56193400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:56190400-56193400	Enhancers	HMEC	breast
5	chr1:56191200-56193800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr1:56191800-56193400	Enhancers	NHDF-Ad	bronchial
7	chr1:56192000-56193400	Enhancers	Fetal Muscle Leg	muscle
8	chr1:56192200-56193400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:56192200-56193400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr1:56192400-56193400	Enhancers	NHEK	skin
11	chr1:56192600-56193400	Enhancers	HSMM	muscle
12	chr1:56192800-56193400	Enhancers	Hela-S3	cervix
13	chr1:56193000-56200600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr1:56193000-56206600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:56193200-56193400	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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