Variant report

Variant	rs4927973
Chromosome Location	chr3:51224495-51224496
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10446473	0.81[EUR][1000 genomes]
rs11130280	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130283	0.83[EUR][1000 genomes]
rs11711643	0.82[EUR][1000 genomes]
rs13064149	0.83[EUR][1000 genomes]
rs13080170	0.85[ASN][1000 genomes]
rs1480362	0.83[EUR][1000 genomes]
rs1480364	0.85[EUR][1000 genomes]
rs2061950	0.84[EUR][1000 genomes]
rs2170178	0.83[EUR][1000 genomes]
rs2291162	0.83[EUR][1000 genomes]
rs2355943	0.83[EUR][1000 genomes]
rs2355945	0.81[EUR][1000 genomes]
rs28708817	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28810453	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2883809	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35356497	0.85[ASN][1000 genomes]
rs3856932	0.85[EUR][1000 genomes]
rs4356848	0.86[ASN][1000 genomes]
rs4364203	0.81[ASN][1000 genomes]
rs4367100	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4434173	0.86[ASN][1000 genomes]
rs4475072	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4560329	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4572801	0.85[ASN][1000 genomes]
rs4927969	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4927970	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4974094	0.83[EUR][1000 genomes]
rs4974099	0.81[EUR][1000 genomes]
rs62257481	0.83[EUR][1000 genomes]
rs62257499	0.81[EUR][1000 genomes]
rs6445501	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6445549	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6772197	0.87[ASN][1000 genomes]
rs6783235	0.83[EUR][1000 genomes]
rs6784455	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6787805	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6796642	0.81[ASN][1000 genomes]
rs6799722	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7618173	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7634799	0.83[EUR][1000 genomes]
rs7651141	0.85[EUR][1000 genomes]
rs899750	0.81[EUR][1000 genomes]
rs9815781	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9839484	0.85[ASN][1000 genomes]
rs9844581	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9847479	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9856566	0.83[EUR][1000 genomes]
rs9857598	0.83[EUR][1000 genomes]
rs9860403	0.83[EUR][1000 genomes]
rs9865532	0.86[ASN][1000 genomes]
rs995543	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1014464	chr3:51220151-51909780	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51213000-51246000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:51223400-51228800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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