Variant report

Variant	rs35356497
Chromosome Location	chr3:51119702-51119703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:51008595..51009448-chr3:51119304..51120395,7	MCF-7	breast:
2	chr3:50899377..50900293-chr3:51119563..51120417,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11130280	0.87[ASN][1000 genomes]
rs13080170	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28708817	0.85[ASN][1000 genomes]
rs28810453	0.83[ASN][1000 genomes]
rs2883809	0.85[ASN][1000 genomes]
rs4356848	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4364203	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4367100	0.85[ASN][1000 genomes]
rs4434173	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4443210	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4475072	0.89[ASN][1000 genomes]
rs4560329	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4572801	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4639007	0.81[EUR][1000 genomes]
rs4927969	0.87[ASN][1000 genomes]
rs4927970	0.86[ASN][1000 genomes]
rs4927973	0.85[ASN][1000 genomes]
rs6445501	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6445549	0.85[ASN][1000 genomes]
rs6445843	0.81[EUR][1000 genomes]
rs6772197	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6784455	0.85[ASN][1000 genomes]
rs6787805	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6795272	0.80[EUR][1000 genomes]
rs6796642	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6799722	0.85[ASN][1000 genomes]
rs6800279	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7618173	0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9815781	0.85[ASN][1000 genomes]
rs9837334	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9839484	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9844581	0.85[ASN][1000 genomes]
rs9847479	0.87[ASN][1000 genomes]
rs9865532	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51108000-51120400	Weak transcription	Fetal Brain Male	brain
2	chr3:51109600-51120000	Weak transcription	Left Ventricle	heart
3	chr3:51110600-51121400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:51111400-51120400	Weak transcription	Brain Anterior Caudate	brain
5	chr3:51111800-51119800	Weak transcription	Fetal Brain Female	brain
6	chr3:51112800-51120000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:51113200-51121000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:51114600-51120000	Weak transcription	Brain Angular Gyrus	brain
9	chr3:51116200-51120200	Weak transcription	Brain Substantia Nigra	brain
10	chr3:51117200-51119800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:51117400-51119800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:51118000-51120200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr3:51118200-51129400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr3:51119200-51120200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr3:51119200-51124000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:51119400-51120200	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr3:51119400-51120800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr3:51119400-51121000	Strong transcription	Brain Hippocampus Middle	brain
19	chr3:51119400-51121400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
20	chr3:51119600-51120200	Strong transcription	H1 Cell Line	embryonic stem cell
21	chr3:51119600-51120600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:51119600-51120600	Strong transcription	Brain Inferior Temporal Lobe	brain
23	chr3:51119600-51120800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:51119600-51120800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr3:51119600-51122800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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