Variant report

Variant	rs9837334
Chromosome Location	chr3:51063173-51063174
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 117 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs10865962	0.94[CEU][hapmap]
rs11130263	0.94[CEU][hapmap]
rs11130267	0.94[CEU][hapmap]
rs11715556	0.94[CEU][hapmap]
rs11917538	1.00[CEU][hapmap]
rs11919932	0.94[CEU][hapmap]
rs12494165	0.94[CEU][hapmap]
rs13061003	1.00[CEU][hapmap]
rs13062018	0.94[CEU][hapmap]
rs13064199	0.94[CEU][hapmap]
rs13069365	0.82[CEU][hapmap]
rs13079136	0.94[CEU][hapmap]
rs13079565	0.94[CEU][hapmap]
rs13080170	1.00[CEU][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13085827	0.94[CEU][hapmap]
rs13086922	0.94[CEU][hapmap]
rs13088434	0.94[CEU][hapmap]
rs13093289	0.94[CEU][hapmap]
rs13093798	0.94[CEU][hapmap]
rs13324500	0.94[CEU][hapmap]
rs1379875	0.94[CEU][hapmap]
rs1531271	0.94[CEU][hapmap]
rs2045510	0.94[CEU][hapmap]
rs2045511	0.94[CEU][hapmap]
rs2085580	0.94[CEU][hapmap]
rs2085582	0.93[CEU][hapmap]
rs2219431	0.94[CEU][hapmap]
rs2219432	0.94[CEU][hapmap]
rs2219433	0.94[CEU][hapmap]
rs2355702	0.94[CEU][hapmap]
rs2675837	0.94[CEU][hapmap]
rs34628582	0.94[CEU][hapmap]
rs35356497	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4132022	0.94[CEU][hapmap]
rs4244696	0.94[CEU][hapmap]
rs4244704	0.94[CEU][hapmap]
rs4263323	0.94[CEU][hapmap]
rs4267675	0.94[CEU][hapmap]
rs4286453	0.94[CEU][hapmap]
rs4309763	0.94[CEU][hapmap]
rs4356848	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4364203	0.86[EUR][1000 genomes]
rs4373098	0.94[CEU][hapmap]
rs4377512	0.94[CEU][hapmap]
rs4434173	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4438692	0.94[CEU][hapmap]
rs4443210	1.00[CEU][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4446244	0.94[CEU][hapmap]
rs4478114	0.94[CEU][hapmap]
rs4488874	0.94[CEU][hapmap]
rs4505743	0.94[CEU][hapmap]
rs4511931	0.94[CEU][hapmap]
rs4511933	0.94[CEU][hapmap]
rs4530518	0.92[CEU][hapmap]
rs4530566	0.94[CEU][hapmap]
rs4555554	0.94[CEU][hapmap]
rs4566574	0.94[CEU][hapmap]
rs4572801	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4582086	0.94[CEU][hapmap]
rs4586853	0.94[CEU][hapmap]
rs4589968	0.94[CEU][hapmap]
rs4615113	0.94[CEU][hapmap]
rs4927960	0.94[CEU][hapmap]
rs4927978	0.94[CEU][hapmap]
rs4927983	0.94[CEU][hapmap]
rs6445600	0.94[CEU][hapmap]
rs6445717	0.94[CEU][hapmap]
rs6445750	0.94[CEU][hapmap]
rs6445779	0.94[CEU][hapmap]
rs6445802	0.91[CEU][hapmap]
rs6446011	0.94[CEU][hapmap]
rs6446118	0.94[CEU][hapmap]
rs6446167	0.94[CEU][hapmap]
rs6446168	0.94[CEU][hapmap]
rs6446243	1.00[CEU][hapmap]
rs6446245	1.00[CEU][hapmap]
rs6768601	0.94[CEU][hapmap]
rs6771085	0.94[CEU][hapmap]
rs6772197	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6787773	0.94[CEU][hapmap]
rs6793613	0.94[CEU][hapmap]
rs6793648	0.94[CEU][hapmap]
rs6795272	0.94[CEU][hapmap]
rs6795573	1.00[CEU][hapmap]
rs6796642	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6800279	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6810241	0.94[CEU][hapmap]
rs7428086	0.94[CEU][hapmap]
rs7429035	0.94[CEU][hapmap]
rs7433217	1.00[CEU][hapmap]
rs7611873	0.94[CEU][hapmap]
rs7614171	0.94[CEU][hapmap]
rs7614482	1.00[CEU][hapmap]
rs7614881	0.94[CEU][hapmap]
rs7615291	0.94[CEU][hapmap]
rs7627266	1.00[CEU][hapmap]
rs7629420	0.94[CEU][hapmap]
rs7629433	0.94[CEU][hapmap]
rs7638082	1.00[CEU][hapmap]
rs7638732	0.94[CEU][hapmap]
rs7640263	0.93[CEU][hapmap]
rs7642158	0.94[CEU][hapmap]
rs7652655	0.94[CEU][hapmap]
rs7652818	0.94[CEU][hapmap]
rs7653451	0.94[CEU][hapmap]
rs9682672	0.94[CEU][hapmap]
rs9713241	0.93[CEU][hapmap]
rs9758600	0.91[CEU][hapmap]
rs9823942	0.94[CEU][hapmap]
rs9828200	0.94[CEU][hapmap]
rs9850021	0.94[CEU][hapmap]
rs9857727	0.94[CEU][hapmap]
rs9865532	1.00[CEU][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9868870	0.94[CEU][hapmap]
rs9875961	1.00[CEU][hapmap]
rs9877272	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51060800-51063600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:51061600-51063400	Enhancers	Stomach Mucosa	stomach
3	chr3:51061800-51063200	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:51061800-51063200	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr3:51061800-51063400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:51062000-51063200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:51062000-51063200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:51062000-51063200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
9	chr3:51062000-51063400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:51062000-51063400	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr3:51062000-51063600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr3:51062200-51063200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr3:51062200-51063200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr3:51062200-51063200	Enhancers	Thymus	Thymus
15	chr3:51062200-51063200	Enhancers	Dnd41	blood
16	chr3:51062200-51063200	Enhancers	Hela-S3	cervix
17	chr3:51062200-51063400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
18	chr3:51062400-51063200	Enhancers	Primary B cells from peripheral blood	blood
19	chr3:51062400-51063200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr3:51062400-51063200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr3:51062400-51063200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr3:51062600-51063200	Enhancers	Fetal Thymus	thymus
23	chr3:51062600-51063200	Enhancers	Gastric	stomach
24	chr3:51062600-51063200	Enhancers	Left Ventricle	heart
25	chr3:51062600-51063200	Enhancers	NHEK	skin
26	chr3:51062600-51065200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:51062800-51063200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr3:51062800-51063200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
29	chr3:51062800-51065200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr3:51062800-51065400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr3:51062800-51065600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr3:51063000-51063200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr3:51063000-51063200	Enhancers	Colonic Mucosa	Colon
34	chr3:51063000-51063400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr3:51063000-51063600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr3:51063000-51063600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr3:51063000-51063800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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