Variant report

Variant	rs7614881
Chromosome Location	chr3:51038375-51038376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 151 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10212250	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs10510754	0.82[ASW][hapmap];0.94[CEU][hapmap]
rs10865962	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11130263	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs11130267	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs11130274	0.86[CHB][hapmap];1.00[GIH][hapmap]
rs11130282	0.86[CHB][hapmap]
rs11715556	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs11917538	0.82[ASW][hapmap];0.94[CEU][hapmap]
rs11919932	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs11921011	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs12494165	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs13061003	0.94[CEU][hapmap]
rs13062018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs13064199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs13065995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs13069365	0.88[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap]
rs13079136	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13079565	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs13080170	0.94[CEU][hapmap]
rs13085827	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs13086922	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs13088434	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13093289	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];0.93[TSI][hapmap]
rs13093798	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs13324500	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1379875	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1471177	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1531271	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17660513	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs1947607	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs1966920	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs2045510	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2045511	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2061388	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2085580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs2085582	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2168863	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2219431	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs2219432	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2219433	1.00[CEU][hapmap]
rs2355702	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2609020	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2609022	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs2609031	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs2609037	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2675792	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs2675830	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs2675832	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs2675834	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2675835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs2675836	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs2675837	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs34628582	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs4132022	0.94[CEU][hapmap];1.00[CHB][hapmap]
rs4244696	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4244697	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs4244704	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4263323	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4267675	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap]
rs4286453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4309763	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4328835	0.85[CHB][hapmap]
rs4356848	0.82[ASW][hapmap];0.94[CEU][hapmap]
rs4367101	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs4373098	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4377512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4378999	0.86[CHB][hapmap]
rs4438692	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4443210	0.82[ASW][hapmap];0.94[CEU][hapmap]
rs4446244	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4453876	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs4478114	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4488874	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4505743	1.00[CEU][hapmap]
rs4511931	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4511933	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4528983	0.86[CHB][hapmap]
rs4530518	1.00[CEU][hapmap]
rs4530566	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4532165	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs4555554	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4566574	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap]
rs4568177	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs4572801	0.93[CEU][hapmap]
rs4582086	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4586853	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4589968	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4615113	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4927960	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs4927978	1.00[CEU][hapmap]
rs4927983	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6445455	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs6445600	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6445717	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6445750	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6445779	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6445802	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[YRI][hapmap]
rs6446011	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6446118	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6446167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6446168	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6446243	0.94[CEU][hapmap]
rs6446245	0.82[ASW][hapmap];0.94[CEU][hapmap]
rs6768601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6771085	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs6772197	0.94[CEU][hapmap]
rs6772664	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs6777719	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs6779658	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs6787773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6793613	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs6793648	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs6795272	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs6795573	0.82[ASW][hapmap];0.94[CEU][hapmap]
rs6810241	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap]
rs7427006	0.86[CHB][hapmap]
rs7428086	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs7429035	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs7433217	0.88[ASW][hapmap];0.94[CEU][hapmap]
rs7611873	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7614171	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7614482	0.94[CEU][hapmap]
rs7615291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7619584	0.85[CHB][hapmap]
rs7627266	0.82[ASW][hapmap];0.94[CEU][hapmap]
rs7628533	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs7629420	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7629433	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7630730	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs7638082	0.82[ASW][hapmap];0.94[CEU][hapmap]
rs7638732	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap]
rs7640263	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7642158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap]
rs7652655	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7652818	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs7653451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9682672	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9713241	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9758600	1.00[CEU][hapmap]
rs9823942	1.00[CEU][hapmap]
rs9828200	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9837334	0.94[CEU][hapmap]
rs9850021	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap]
rs9857727	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9865532	0.94[CEU][hapmap]
rs9868870	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.91[GIH][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs9869945	0.82[ASW][hapmap];0.94[CEU][hapmap]
rs9871539	0.86[CHB][hapmap];1.00[GIH][hapmap];0.85[TSI][hapmap]
rs9875961	0.82[ASW][hapmap];0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7614881	TSPAN14	trans	cerebellum	SCAN
rs7614881	NCKIPSD	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51037400-51038600	Enhancers	Liver	Liver
2	chr3:51037800-51038800	Weak transcription	HepG2	liver

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