Variant report

Variant	rs2355702
Chromosome Location	chr3:50914241-50914242
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CISH-4	chr3:50914143-50914287	NONHSAT089857

Extended variants
information (count: 373 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:370)

rs_ID	r²[population]
rs1013233	0.89[EUR][1000 genomes]
rs10510754	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs10865962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11130259	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11130263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130267	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11710858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11712367	0.94[CEU][hapmap]
rs11715556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11917538	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs11919932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11921011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12185906	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12639126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12639243	0.81[EUR][1000 genomes]
rs13061003	0.94[CEU][hapmap]
rs13062018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13064199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13065995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13069365	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs13072085	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075344	0.81[EUR][1000 genomes]
rs13075377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13079565	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085096	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13085320	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085759	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13086545	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13086922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13088041	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13088988	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13089719	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13092418	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13093289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13093798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13094785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13095706	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13096268	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097480	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13099712	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13100403	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13324500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1379873	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1379874	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1379875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1385025	0.88[EUR][1000 genomes]
rs1458385	0.81[EUR][1000 genomes]
rs1458386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1458387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1463496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1463497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1471177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1531271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1563683	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1563684	0.89[EUR][1000 genomes]
rs1598927	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1598928	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17660179	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17660513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1824280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1824281	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1841067	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1902960	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1947607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966921	0.89[EUR][1000 genomes]
rs1971976	0.89[EUR][1000 genomes]
rs1975834	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2045510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2061388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085584	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085585	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085586	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085587	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2085588	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2086827	0.89[EUR][1000 genomes]
rs2125364	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2125366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2125369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2168863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168865	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2168866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2199050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2219431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2219432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2219433	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2262810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2355341	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2355692	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2355696	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2355700	0.81[EUR][1000 genomes]
rs2355705	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2608989	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2608990	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608993	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608995	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608997	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608999	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609002	0.80[EUR][1000 genomes]
rs2609005	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609016	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609018	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609019	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609021	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2609025	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609028	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2609031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2609035	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2609036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2609037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675769	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675771	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675774	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675784	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675787	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675788	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675789	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675790	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675791	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675793	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675794	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675799	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675800	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675802	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2675804	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675806	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2675808	0.81[EUR][1000 genomes]
rs2675809	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675810	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675813	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2675819	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675821	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675822	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675825	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675827	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675828	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675829	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28762180	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2883652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3101107	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3106826	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34002537	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34006781	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34040634	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34048522	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34075959	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34184643	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34266990	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34307982	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34320663	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34390947	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34456131	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34481683	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34492910	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34576538	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34602347	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34628582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34640865	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34712521	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34773360	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34786937	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34836308	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34848480	0.88[EUR][1000 genomes]
rs34855107	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34866096	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34900426	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35082196	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35098074	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35121433	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35122553	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35140911	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35150418	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35170043	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35190976	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35193996	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35273485	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35429015	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35481031	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35492420	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35499413	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35531616	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35566897	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35693100	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35842302	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35875816	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36011798	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs36018544	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36056105	0.95[ASN][1000 genomes]
rs36057916	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36110549	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36177541	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs375544	0.85[EUR][1000 genomes]
rs3792325	0.85[EUR][1000 genomes]
rs3792328	0.85[EUR][1000 genomes]
rs3804632	0.85[EUR][1000 genomes]
rs3940822	0.87[ASN][1000 genomes]
rs3943212	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs396302	0.85[EUR][1000 genomes]
rs4131887	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4132022	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4263323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4346541	0.81[EUR][1000 genomes]
rs4346542	0.81[EUR][1000 genomes]
rs4373098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4377512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4429624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs443436	0.85[EUR][1000 genomes]
rs4438692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4443210	0.94[CEU][hapmap]
rs4452323	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs448028	0.85[EUR][1000 genomes]
rs4482663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4485709	0.94[CEU][hapmap]
rs4488874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4505743	1.00[CEU][hapmap]
rs4511931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4511933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4530518	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4530566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4555554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4566574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs4572801	0.94[CEU][hapmap]
rs4582086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4586853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4615113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4688693	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4688702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4688703	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4927960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5000953	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55785224	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57378417	0.95[ASN][1000 genomes]
rs57642230	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57732473	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60292376	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60898829	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61549968	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61638760	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs616589	0.85[EUR][1000 genomes]
rs6445600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6445717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6445750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6445779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6446210	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6446212	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6446213	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs6446214	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6446215	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6446220	0.94[CEU][hapmap]
rs6446222	0.94[CEU][hapmap]
rs6446243	0.94[CEU][hapmap]
rs6446245	0.94[CEU][hapmap]
rs66472954	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66684483	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66792086	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67211895	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67316637	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67410403	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67445615	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6763779	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6763990	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67672341	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6768601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6770954	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6771085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6775012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6776224	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs6778680	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs67794896	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6779819	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs67843425	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6787773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs67895930	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6795272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6795573	0.94[CEU][hapmap]
rs6796769	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs68096338	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6810241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs68130118	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68191286	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71326944	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71326945	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs71329007	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71329008	0.92[ASN][1000 genomes]
rs71329014	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71329017	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71329021	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71329023	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71329039	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs728901	0.87[EUR][1000 genomes]
rs73072418	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73072438	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73072442	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73079190	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73079191	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73081114	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73081144	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7372046	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73833888	0.92[ASN][1000 genomes]
rs7426759	0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7428086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7429035	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7433217	0.94[CEU][hapmap]
rs751851	0.89[EUR][1000 genomes]
rs7611428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7614171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7614482	0.94[CEU][hapmap]
rs7614881	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7615703	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs7623868	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7623976	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7627266	0.94[CEU][hapmap]
rs7629253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7629420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7629809	0.80[EUR][1000 genomes]
rs7635666	0.82[EUR][1000 genomes]
rs7638082	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs7638732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7642158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7645212	0.85[EUR][1000 genomes]
rs7650574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7652715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs808149	0.85[EUR][1000 genomes]
rs813243	0.85[EUR][1000 genomes]
rs900735	0.89[EUR][1000 genomes]
rs936405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs936406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9682401	0.85[EUR][1000 genomes]
rs9682672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9713241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9758600	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9813718	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9823942	1.00[CEU][hapmap];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9825535	0.94[CEU][hapmap]
rs9826757	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9837334	0.94[CEU][hapmap]
rs9838283	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9839684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9844519	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9850021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9857727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9859692	0.81[EUR][1000 genomes]
rs9868870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9869945	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs9875961	0.94[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50911200-50914400	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:50914000-50915000	Enhancers	Rectal Smooth Muscle	rectum
3	chr3:50914000-50915000	Enhancers	Stomach Smooth Muscle	stomach
4	chr3:50914200-50915000	Enhancers	Colon Smooth Muscle	Colon
5	chr3:50914200-50915200	Enhancers	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

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