Variant report

Variant	rs7372046
Chromosome Location	chr3:51020242-51020243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 221 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:218)

rs_ID	r²[population]
rs10865962	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130259	0.85[ASN][1000 genomes]
rs11130263	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11130267	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921011	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12185906	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13062018	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13064199	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13065995	0.95[ASN][1000 genomes]
rs13069365	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13072085	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13075377	0.95[ASN][1000 genomes]
rs13079136	0.95[ASN][1000 genomes]
rs13079565	0.95[ASN][1000 genomes]
rs13085320	0.95[ASN][1000 genomes]
rs13085759	0.95[ASN][1000 genomes]
rs13085827	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13086545	0.89[ASN][1000 genomes]
rs13086922	0.95[ASN][1000 genomes]
rs13088041	0.95[ASN][1000 genomes]
rs13088434	0.95[ASN][1000 genomes]
rs13088988	0.95[ASN][1000 genomes]
rs13092418	0.95[ASN][1000 genomes]
rs13093289	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13093798	0.95[ASN][1000 genomes]
rs13095706	0.95[ASN][1000 genomes]
rs13095920	0.89[ASN][1000 genomes]
rs13096268	0.95[ASN][1000 genomes]
rs13097480	0.95[ASN][1000 genomes]
rs13099712	0.95[ASN][1000 genomes]
rs13100403	0.95[ASN][1000 genomes]
rs1379873	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1379874	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1379875	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1471177	0.95[ASN][1000 genomes]
rs1531271	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1598927	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1598928	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17660179	0.89[ASN][1000 genomes]
rs17660513	0.95[ASN][1000 genomes]
rs1841067	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1947607	0.95[ASN][1000 genomes]
rs1966920	0.95[ASN][1000 genomes]
rs2045510	0.95[ASN][1000 genomes]
rs2045511	0.95[ASN][1000 genomes]
rs2061388	0.95[ASN][1000 genomes]
rs2085580	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2085582	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2085584	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2085585	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2085586	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2085587	0.95[ASN][1000 genomes]
rs2085588	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2125364	0.95[ASN][1000 genomes]
rs2168863	0.95[ASN][1000 genomes]
rs2168865	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2199050	0.89[ASN][1000 genomes]
rs2219431	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2219432	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2219433	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2262810	0.89[ASN][1000 genomes]
rs2355692	0.95[ASN][1000 genomes]
rs2355696	0.95[ASN][1000 genomes]
rs2355702	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2355705	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2608989	0.89[ASN][1000 genomes]
rs2608990	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2608993	0.95[ASN][1000 genomes]
rs2608995	0.95[ASN][1000 genomes]
rs2608997	0.95[ASN][1000 genomes]
rs2608999	0.95[ASN][1000 genomes]
rs2609001	0.95[ASN][1000 genomes]
rs2609005	0.89[ASN][1000 genomes]
rs2609006	0.89[ASN][1000 genomes]
rs2609016	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609018	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609019	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609020	0.95[ASN][1000 genomes]
rs2609021	0.95[ASN][1000 genomes]
rs2609022	0.95[ASN][1000 genomes]
rs2609024	0.87[ASN][1000 genomes]
rs2609025	0.89[ASN][1000 genomes]
rs2609028	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2609031	0.81[ASN][1000 genomes]
rs2609037	0.95[ASN][1000 genomes]
rs2675769	0.89[ASN][1000 genomes]
rs2675771	0.89[ASN][1000 genomes]
rs2675772	0.89[ASN][1000 genomes]
rs2675773	0.89[ASN][1000 genomes]
rs2675774	0.89[ASN][1000 genomes]
rs2675784	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675787	0.95[ASN][1000 genomes]
rs2675788	0.95[ASN][1000 genomes]
rs2675789	0.95[ASN][1000 genomes]
rs2675790	0.95[ASN][1000 genomes]
rs2675791	0.95[ASN][1000 genomes]
rs2675792	0.95[ASN][1000 genomes]
rs2675793	0.95[ASN][1000 genomes]
rs2675794	0.89[ASN][1000 genomes]
rs2675799	0.95[ASN][1000 genomes]
rs2675800	0.95[ASN][1000 genomes]
rs2675802	0.82[ASN][1000 genomes]
rs2675804	0.95[ASN][1000 genomes]
rs2675809	0.89[ASN][1000 genomes]
rs2675810	0.89[ASN][1000 genomes]
rs2675812	0.89[ASN][1000 genomes]
rs2675813	0.89[ASN][1000 genomes]
rs2675819	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675821	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675822	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675825	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2675827	0.89[ASN][1000 genomes]
rs2675828	0.89[ASN][1000 genomes]
rs2675829	0.95[ASN][1000 genomes]
rs2675830	0.95[ASN][1000 genomes]
rs2675832	0.95[ASN][1000 genomes]
rs2675834	0.95[ASN][1000 genomes]
rs2675835	0.95[ASN][1000 genomes]
rs2675836	0.95[ASN][1000 genomes]
rs2675837	0.95[ASN][1000 genomes]
rs28762180	0.95[ASN][1000 genomes]
rs3101107	0.95[ASN][1000 genomes]
rs3106826	0.95[ASN][1000 genomes]
rs34002537	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34006781	0.95[ASN][1000 genomes]
rs34040634	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34048522	0.95[ASN][1000 genomes]
rs34075959	0.95[ASN][1000 genomes]
rs34184643	0.95[ASN][1000 genomes]
rs34307982	0.95[ASN][1000 genomes]
rs34320663	0.95[ASN][1000 genomes]
rs34456131	0.92[ASN][1000 genomes]
rs34481683	0.95[ASN][1000 genomes]
rs34576538	0.95[ASN][1000 genomes]
rs34602347	0.89[ASN][1000 genomes]
rs34628582	0.95[ASN][1000 genomes]
rs34640865	0.95[ASN][1000 genomes]
rs34712521	0.95[ASN][1000 genomes]
rs34786937	0.95[ASN][1000 genomes]
rs34836308	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34855107	0.95[ASN][1000 genomes]
rs34900426	0.89[ASN][1000 genomes]
rs35082196	0.95[ASN][1000 genomes]
rs35098074	0.92[ASN][1000 genomes]
rs35121433	0.95[ASN][1000 genomes]
rs35122553	0.95[ASN][1000 genomes]
rs35140911	0.89[ASN][1000 genomes]
rs35150418	0.95[ASN][1000 genomes]
rs35190976	0.95[ASN][1000 genomes]
rs35193996	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35273485	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35481031	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35492420	0.95[ASN][1000 genomes]
rs35499413	0.90[ASN][1000 genomes]
rs35693100	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35842302	0.95[ASN][1000 genomes]
rs35875816	0.95[ASN][1000 genomes]
rs36018544	0.95[ASN][1000 genomes]
rs36056105	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36057916	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36110549	0.95[ASN][1000 genomes]
rs36177541	0.89[ASN][1000 genomes]
rs3940822	0.81[ASN][1000 genomes]
rs4131887	0.95[ASN][1000 genomes]
rs4452323	0.95[ASN][1000 genomes]
rs4482663	0.89[ASN][1000 genomes]
rs4530518	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4688693	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs55785224	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57378417	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57642230	0.95[ASN][1000 genomes]
rs57732473	0.95[ASN][1000 genomes]
rs60292376	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60898829	0.95[ASN][1000 genomes]
rs61638760	0.95[ASN][1000 genomes]
rs66472954	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66684483	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66792086	0.97[ASN][1000 genomes]
rs67211895	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67316637	0.95[ASN][1000 genomes]
rs67410403	0.95[ASN][1000 genomes]
rs67445615	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6763779	0.97[ASN][1000 genomes]
rs6763990	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs67672341	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6770954	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6771085	0.95[ASN][1000 genomes]
rs6775012	0.84[ASN][1000 genomes]
rs67794896	0.95[ASN][1000 genomes]
rs67843425	0.95[ASN][1000 genomes]
rs67895930	0.95[ASN][1000 genomes]
rs68096338	0.95[ASN][1000 genomes]
rs6810241	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs68130118	0.95[ASN][1000 genomes]
rs71329007	0.95[ASN][1000 genomes]
rs71329008	0.86[ASN][1000 genomes]
rs71329014	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs71329017	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71329021	0.95[ASN][1000 genomes]
rs71329023	0.95[ASN][1000 genomes]
rs71329039	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73079190	0.89[ASN][1000 genomes]
rs73079191	0.95[ASN][1000 genomes]
rs73081114	0.95[ASN][1000 genomes]
rs73081144	0.95[ASN][1000 genomes]
rs73833888	0.86[ASN][1000 genomes]
rs7426759	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7428086	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7429035	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7623868	0.95[ASN][1000 genomes]
rs7623976	0.95[ASN][1000 genomes]
rs7629809	0.90[EUR][1000 genomes]
rs7642158	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9813718	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9823942	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9839684	0.84[ASN][1000 genomes]
rs9844519	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9868870	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1004881	chr3:50900793-51032918	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536568	chr3:50900793-51032918	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51017000-51020800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:51019600-51023800	Weak transcription	Fetal Brain Female	brain
3	chr3:51019800-51021600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:51019800-51021600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:51020200-51020600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin

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