Variant report

Variant	rs9838283
Chromosome Location	chr3:50820486-50820487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 155 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:155)

rs_ID	r²[population]
rs10510754	0.94[CEU][hapmap]
rs11130255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11130259	0.80[AMR][1000 genomes]
rs11130263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11710858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes]
rs11712367	0.94[CEU][hapmap]
rs11917538	0.94[CEU][hapmap]
rs11921011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs12639126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13065995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13069365	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13075377	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13079136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13079565	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13085827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13086922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13088434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13093798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13094336	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13094785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.84[AMR][1000 genomes]
rs13095920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs13096264	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13096772	0.94[CEU][hapmap]
rs1379875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1385025	0.94[CEU][hapmap]
rs1458386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs1458387	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1463496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs1463497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs1471177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1531271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1563683	0.82[AMR][1000 genomes]
rs175634	0.83[CEU][hapmap]
rs17660179	0.82[AMR][1000 genomes]
rs17660513	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1824280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs1824281	1.00[CEU][hapmap]
rs1902960	0.82[AMR][1000 genomes]
rs1947607	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1966920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201194	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs201198	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2045510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2045511	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2061388	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2085580	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2085582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2085588	0.88[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2125366	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs2125369	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2168863	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2168866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2199050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs2219431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2219432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2219433	1.00[CEU][hapmap];0.83[AFR][1000 genomes]
rs2262810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs2355702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2355705	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2608988	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2608989	0.82[AMR][1000 genomes]
rs2609001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs2609005	0.82[AMR][1000 genomes]
rs2609006	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs2609020	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2609022	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2609024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs2609031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2609036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2609037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2675769	0.82[AMR][1000 genomes]
rs2675771	0.82[AMR][1000 genomes]
rs2675772	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs2675773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes]
rs2675774	0.82[AMR][1000 genomes]
rs2675792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2675802	0.82[AMR][1000 genomes]
rs2675806	1.00[CEU][hapmap]
rs2675809	0.82[AMR][1000 genomes]
rs2675810	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs2675812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs2675813	0.82[AMR][1000 genomes]
rs2675816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2675827	0.82[AMR][1000 genomes]
rs2675830	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2675832	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2675834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2675835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2675836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2675837	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2883652	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs34628582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35140911	0.82[AMR][1000 genomes]
rs375544	1.00[CEU][hapmap]
rs3792325	1.00[CEU][hapmap]
rs3792328	1.00[CEU][hapmap]
rs3804628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3943212	1.00[CEU][hapmap]
rs396302	1.00[CEU][hapmap]
rs4028317	0.86[AFR][1000 genomes]
rs4132022	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs414171	1.00[CEU][hapmap]
rs4429624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs443436	1.00[CEU][hapmap]
rs448028	1.00[CEU][hapmap]
rs4482663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4485709	0.94[CEU][hapmap]
rs4530518	1.00[CEU][hapmap]
rs4688693	0.84[AMR][1000 genomes]
rs4688702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs4688703	0.82[AMR][1000 genomes]
rs490634	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs5000953	0.82[AMR][1000 genomes]
rs616589	1.00[CEU][hapmap]
rs6446210	0.88[AMR][1000 genomes]
rs6446212	1.00[CEU][hapmap]
rs6446213	1.00[CEU][hapmap]
rs6446214	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6446220	0.94[CEU][hapmap]
rs6446222	0.94[CEU][hapmap]
rs6763990	0.84[AFR][1000 genomes]
rs6771085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6775012	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs6776224	1.00[CEU][hapmap]
rs6778680	1.00[CEU][hapmap]
rs6779819	1.00[CEU][hapmap]
rs6791880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6795573	0.94[CEU][hapmap]
rs6796769	1.00[CEU][hapmap]
rs6810241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs728901	1.00[CEU][hapmap]
rs7428086	0.82[AMR][1000 genomes]
rs7433217	0.94[CEU][hapmap]
rs7611428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes]
rs7615703	1.00[CEU][hapmap]
rs7627266	0.94[CEU][hapmap]
rs7629253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs7638082	0.94[CEU][hapmap]
rs7642158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7650574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs7652715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[AMR][1000 genomes]
rs809451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs813243	1.00[CEU][hapmap]
rs900735	1.00[CEU][hapmap]
rs936405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs936406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9682401	1.00[CEU][hapmap]
rs9823942	1.00[CEU][hapmap]
rs9825535	0.94[CEU][hapmap]
rs9826757	1.00[CEU][hapmap]
rs9839684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs9844519	0.88[AMR][1000 genomes]
rs9868870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes]
rs9869945	0.94[CEU][hapmap]
rs9875961	0.94[CEU][hapmap]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50814800-50821400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:50818000-50824200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:50819400-50825200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:50819400-50825600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links