Variant report

Variant	rs3792325
Chromosome Location	chr3:50663574-50663575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:50645081..50647837-chr3:50662367..50665362,2	MCF-7	breast:
2	chr3:50606793..50609783-chr3:50662218..50664700,2	MCF-7	breast:
3	chr3:50661088..50664014-chr3:50668534..50670776,2	K562	blood:
4	chr3:50661810..50665034-chr3:50668635..50670434,3	MCF-7	breast:
5	chr3:50653773..50657088-chr3:50661909..50665179,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114735	Chromatin interaction
ENSG00000088543	Chromatin interaction
ENSG00000114738	Chromatin interaction

Extended variants
information (count: 235 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:228)

rs_ID	r²[population]
rs1013233	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1034405	0.93[YRI][hapmap]
rs10510754	0.94[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs11130255	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11710858	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11712367	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs11716398	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11921011	1.00[CEU][hapmap]
rs12639126	1.00[CEU][hapmap]
rs129310	0.91[CHB][hapmap];0.91[JPT][hapmap];0.87[YRI][hapmap];0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13065995	1.00[CEU][hapmap]
rs13072085	0.83[EUR][1000 genomes]
rs13075344	0.85[EUR][1000 genomes]
rs13075377	1.00[CEU][hapmap]
rs13084771	0.91[EUR][1000 genomes]
rs13085096	0.85[EUR][1000 genomes]
rs13089719	0.88[EUR][1000 genomes]
rs13094336	0.81[CEU][hapmap]
rs13094785	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13095920	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs13096264	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs13096772	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs1379873	0.84[EUR][1000 genomes]
rs1379874	0.84[EUR][1000 genomes]
rs1379875	0.84[EUR][1000 genomes]
rs1385025	0.94[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1458386	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1458387	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1463496	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1463497	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1471177	1.00[CEU][hapmap]
rs1531271	0.84[EUR][1000 genomes]
rs1563683	0.82[EUR][1000 genomes]
rs1563684	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1598927	0.85[EUR][1000 genomes]
rs1598928	0.84[EUR][1000 genomes]
rs175634	0.83[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17660179	0.81[EUR][1000 genomes]
rs17660513	1.00[CEU][hapmap]
rs1824280	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1824281	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1841067	0.84[EUR][1000 genomes]
rs1902960	0.82[EUR][1000 genomes]
rs1947607	1.00[CEU][hapmap]
rs1966920	1.00[CEU][hapmap]
rs1966921	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1971976	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs201193	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs201194	0.83[CEU][hapmap]
rs2061388	1.00[CEU][hapmap]
rs2085582	0.84[EUR][1000 genomes]
rs2085584	0.84[EUR][1000 genomes]
rs2085585	0.84[EUR][1000 genomes]
rs2085586	0.84[EUR][1000 genomes]
rs2086827	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2125366	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2125369	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2168863	1.00[CEU][hapmap]
rs2168865	0.84[EUR][1000 genomes]
rs2168866	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2170840	0.82[AFR][1000 genomes]
rs2199050	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2219431	0.84[EUR][1000 genomes]
rs2219432	0.84[EUR][1000 genomes]
rs2219433	0.85[EUR][1000 genomes]
rs2232248	0.90[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2239751	0.80[CHB][hapmap]
rs2262810	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2269505	0.90[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2355323	0.91[CHB][hapmap];0.91[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2355341	0.86[EUR][1000 genomes]
rs2355702	0.85[EUR][1000 genomes]
rs2608988	1.00[CEU][hapmap]
rs2608989	0.80[EUR][1000 genomes]
rs2608990	0.84[EUR][1000 genomes]
rs2608999	0.80[EUR][1000 genomes]
rs2609001	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2609005	0.80[EUR][1000 genomes]
rs2609006	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2609016	0.84[EUR][1000 genomes]
rs2609018	0.84[EUR][1000 genomes]
rs2609019	0.84[EUR][1000 genomes]
rs2609020	1.00[CEU][hapmap]
rs2609022	1.00[CEU][hapmap]
rs2609024	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2609028	0.84[EUR][1000 genomes]
rs2609031	1.00[CEU][hapmap]
rs2609035	0.86[EUR][1000 genomes]
rs2609036	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2609037	1.00[CEU][hapmap]
rs2675769	0.80[EUR][1000 genomes]
rs2675771	0.80[EUR][1000 genomes]
rs2675772	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2675773	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2675774	0.80[EUR][1000 genomes]
rs2675784	0.84[EUR][1000 genomes]
rs2675792	1.00[CEU][hapmap]
rs2675806	1.00[CEU][hapmap]
rs2675810	0.94[CEU][hapmap];0.80[EUR][1000 genomes]
rs2675812	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2675813	0.80[EUR][1000 genomes]
rs2675816	1.00[CEU][hapmap]
rs2675819	0.84[EUR][1000 genomes]
rs2675821	0.84[EUR][1000 genomes]
rs2675822	0.84[EUR][1000 genomes]
rs2675825	0.84[EUR][1000 genomes]
rs2675827	0.80[EUR][1000 genomes]
rs2675830	1.00[CEU][hapmap]
rs2675832	1.00[CEU][hapmap]
rs2675834	1.00[CEU][hapmap]
rs2675835	1.00[CEU][hapmap]
rs2675836	1.00[CEU][hapmap]
rs2883652	1.00[CEU][hapmap]
rs34048522	0.80[EUR][1000 genomes]
rs34266990	0.85[EUR][1000 genomes]
rs34390947	0.85[EUR][1000 genomes]
rs34492910	0.88[EUR][1000 genomes]
rs34632971	0.91[EUR][1000 genomes]
rs34773360	0.86[EUR][1000 genomes]
rs34846525	0.91[EUR][1000 genomes]
rs34848480	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34866096	0.88[EUR][1000 genomes]
rs35140911	0.80[EUR][1000 genomes]
rs35170043	0.86[EUR][1000 genomes]
rs35193996	0.84[EUR][1000 genomes]
rs35429015	0.88[EUR][1000 genomes]
rs35531616	0.88[EUR][1000 genomes]
rs35566897	0.88[EUR][1000 genomes]
rs36011798	0.88[EUR][1000 genomes]
rs36057916	0.84[EUR][1000 genomes]
rs375544	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3792323	0.84[CHB][hapmap]
rs3792328	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3804627	0.90[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs3804628	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs3804632	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs388483	0.90[YRI][hapmap]
rs3943212	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs396302	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs399971	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs414171	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs417592	0.90[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs441516	0.90[CHB][hapmap];0.90[JPT][hapmap];0.97[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4429624	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs443030	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs443436	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4476497	0.82[AFR][1000 genomes]
rs448028	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4482663	1.00[CEU][hapmap]
rs4485709	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs4530518	0.85[EUR][1000 genomes]
rs453570	0.90[CHB][hapmap];0.90[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4688702	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4688703	0.82[EUR][1000 genomes]
rs4688705	0.82[AFR][1000 genomes]
rs490634	0.84[CEU][hapmap]
rs5000953	0.82[EUR][1000 genomes]
rs61549968	0.88[EUR][1000 genomes]
rs616589	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs616689	0.85[AFR][1000 genomes]
rs622502	0.80[EUR][1000 genomes]
rs6446208	0.82[AFR][1000 genomes]
rs6446210	0.89[EUR][1000 genomes]
rs6446212	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6446213	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6446214	0.94[CEU][hapmap]
rs6446215	0.82[EUR][1000 genomes]
rs6446220	0.94[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap]
rs6446222	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs66472954	0.84[EUR][1000 genomes]
rs66684483	0.84[EUR][1000 genomes]
rs66867590	0.91[EUR][1000 genomes]
rs67211895	0.84[EUR][1000 genomes]
rs67410403	0.80[EUR][1000 genomes]
rs6763990	0.81[EUR][1000 genomes]
rs67672341	0.84[EUR][1000 genomes]
rs6770954	0.83[EUR][1000 genomes]
rs6771348	0.82[AFR][1000 genomes]
rs6775012	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs6776224	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6778680	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6779819	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6783922	0.82[AFR][1000 genomes]
rs6791880	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6794155	0.81[AFR][1000 genomes]
rs6796769	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs68191286	0.88[EUR][1000 genomes]
rs695170	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs71326944	0.88[EUR][1000 genomes]
rs71326945	0.85[EUR][1000 genomes]
rs71329007	0.80[EUR][1000 genomes]
rs71329014	0.81[EUR][1000 genomes]
rs71329017	0.84[EUR][1000 genomes]
rs728901	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73072418	0.88[EUR][1000 genomes]
rs73072438	0.86[EUR][1000 genomes]
rs73072442	0.88[EUR][1000 genomes]
rs745356	0.82[AFR][1000 genomes]
rs751851	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs754298	0.87[CEU][hapmap]
rs7611428	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7615703	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7629253	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7635666	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7642158	0.85[EUR][1000 genomes]
rs7645212	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7646236	0.90[CHB][hapmap];0.90[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7650574	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs7652715	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs808148	0.82[AFR][1000 genomes]
rs808149	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs809451	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs809454	0.91[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs813243	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs876103	0.82[AFR][1000 genomes]
rs876104	0.82[AFR][1000 genomes]
rs876105	0.82[AFR][1000 genomes]
rs900735	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs936405	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs936406	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs9682401	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9825535	0.94[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap]
rs9826757	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9838283	1.00[CEU][hapmap]
rs9839684	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs9868889	0.85[AFR][1000 genomes]
rs9869945	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs9879397	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013225	chr3:50440826-50700448	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv536566	chr3:50440826-50700448	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv984540	chr3:50473691-50669310	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1012501	chr3:50483037-50679591	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv536567	chr3:50483037-50679591	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
6	nsv460533	chr3:50574213-50678151	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv590273	chr3:50574213-50678151	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3792325	HEMK1	cis	Lymphoblastoid	GTEx

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50655400-50677800	Weak transcription	Aorta	Aorta
2	chr3:50655600-50681200	Weak transcription	Fetal Brain Female	brain
3	chr3:50655800-50665000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:50655800-50665000	Weak transcription	Brain Angular Gyrus	brain
5	chr3:50655800-50666000	Enhancers	Fetal Heart	heart
6	chr3:50656000-50675600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr3:50656000-50677800	Weak transcription	Rectal Smooth Muscle	rectum
8	chr3:50656800-50664200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr3:50657600-50678200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:50658400-50664400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:50658400-50669000	Strong transcription	Fetal Stomach	stomach
12	chr3:50658600-50663600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr3:50658600-50664600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:50658600-50665400	Weak transcription	Brain Anterior Caudate	brain
15	chr3:50659200-50664400	Transcr. at gene 5' and 3'	Dnd41	blood
16	chr3:50659400-50665800	Enhancers	Right Atrium	heart
17	chr3:50659600-50664200	Enhancers	Brain Hippocampus Middle	brain
18	chr3:50660200-50664200	Enhancers	Psoas Muscle	Psoas
19	chr3:50660200-50665000	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr3:50660200-50666200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:50660200-50666200	Enhancers	Lung	lung
22	chr3:50660200-50671600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:50660200-50677000	Weak transcription	Liver	Liver
24	chr3:50661000-50663600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr3:50661000-50664000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
26	chr3:50661000-50664200	Enhancers	Pancreas	Pancrea
27	chr3:50661000-50664800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:50661000-50665000	Enhancers	HSMM	muscle
29	chr3:50661000-50665400	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr3:50661000-50665800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr3:50661200-50663800	Enhancers	Right Ventricle	heart
32	chr3:50661200-50668800	Strong transcription	Fetal Intestine Small	intestine
33	chr3:50661400-50664000	Enhancers	Gastric	stomach
34	chr3:50661400-50664600	Enhancers	Hela-S3	cervix
35	chr3:50661400-50665000	Enhancers	HMEC	breast
36	chr3:50661400-50671600	Enhancers	Left Ventricle	heart
37	chr3:50661600-50663600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr3:50661600-50663800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr3:50661600-50667200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr3:50661600-50670600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
41	chr3:50661600-50674400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr3:50661600-50675800	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr3:50661600-50688200	Weak transcription	Small Intestine	intestine
44	chr3:50661800-50663600	Enhancers	Thymus	Thymus
45	chr3:50661800-50663800	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr3:50661800-50663800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr3:50661800-50664800	Weak transcription	Stomach Mucosa	stomach
48	chr3:50661800-50665000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr3:50661800-50665200	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr3:50661800-50666600	Enhancers	Placenta	Placenta

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