Variant report

Variant	rs13094336
Chromosome Location	chr3:50632870-50632871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:50614741..50617207-chr3:50631389..50633119,2	MCF-7	breast:
2	chr3:50605337..50613345-chr3:50630313..50633692,8	MCF-7	breast:
3	chr3:50631688..50633387-chr3:50649479..50651263,2	K562	blood:
4	chr3:50626963..50632967-chr3:50633102..50640850,17	K562	blood:

Variant related genes	Relation type
ENSG00000114738	Chromatin interaction
ENSG00000088543	Chromatin interaction
ENSG00000114735	Chromatin interaction

Extended variants
information (count: 265 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:254)

rs_ID	r²[population]
rs1034405	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130255	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11710858	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11719998	0.84[EUR][1000 genomes]
rs12490042	0.81[CEU][hapmap]
rs12491425	0.85[EUR][1000 genomes]
rs12639126	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs129310	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13065995	0.88[AFR][1000 genomes]
rs13072085	0.82[AFR][1000 genomes]
rs13075344	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13075377	0.88[AFR][1000 genomes]
rs13076850	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13083004	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13084476	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13084771	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13085096	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13087550	0.81[CEU][hapmap]
rs13089719	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13091933	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13094785	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13095920	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13096264	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13096268	0.88[AFR][1000 genomes]
rs13096772	0.80[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs13099712	0.88[AFR][1000 genomes]
rs13100403	0.88[AFR][1000 genomes]
rs1379873	0.82[AFR][1000 genomes]
rs1379874	0.82[AFR][1000 genomes]
rs1379875	0.82[AFR][1000 genomes]
rs1458386	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1458387	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1463496	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1463497	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1531271	0.82[AFR][1000 genomes]
rs1563683	1.00[AFR][1000 genomes]
rs1598928	0.82[AFR][1000 genomes]
rs175634	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs17660179	0.88[AFR][1000 genomes]
rs17660513	0.88[AFR][1000 genomes]
rs17787569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1824280	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes]
rs1824281	0.81[CEU][hapmap]
rs1841067	0.82[AFR][1000 genomes]
rs1902960	1.00[AFR][1000 genomes]
rs1947607	0.88[AFR][1000 genomes]
rs1966920	0.88[AFR][1000 genomes]
rs1975834	0.89[AFR][1000 genomes]
rs201193	0.85[EUR][1000 genomes]
rs201194	0.93[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs201196	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201197	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs201198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045510	0.88[AFR][1000 genomes]
rs2045511	0.88[AFR][1000 genomes]
rs2061388	0.88[AFR][1000 genomes]
rs2085582	0.82[AFR][1000 genomes]
rs2085584	0.82[AFR][1000 genomes]
rs2085585	0.82[AFR][1000 genomes]
rs2085586	0.82[AFR][1000 genomes]
rs2085587	0.88[AFR][1000 genomes]
rs2125364	0.88[AFR][1000 genomes]
rs2125366	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AFR][1000 genomes]
rs2125369	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2168863	0.88[AFR][1000 genomes]
rs2168865	0.82[AFR][1000 genomes]
rs2168866	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2199050	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2219431	0.82[AFR][1000 genomes]
rs2219432	0.82[AFR][1000 genomes]
rs2227280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2232248	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2232253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236956	0.81[CEU][hapmap]
rs2236959	0.80[CEU][hapmap]
rs2236961	0.81[CEU][hapmap]
rs2262810	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2269505	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2269507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2282758	0.81[CEU][hapmap]
rs2355321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2355323	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2355341	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2355696	0.88[AFR][1000 genomes]
rs2608988	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs2608989	1.00[AFR][1000 genomes]
rs2608993	0.88[AFR][1000 genomes]
rs2608997	0.88[AFR][1000 genomes]
rs2608999	0.88[AFR][1000 genomes]
rs2609001	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2609005	0.88[AFR][1000 genomes]
rs2609006	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2609016	0.82[AFR][1000 genomes]
rs2609018	0.82[AFR][1000 genomes]
rs2609019	0.82[AFR][1000 genomes]
rs2609020	0.88[AFR][1000 genomes]
rs2609021	0.88[AFR][1000 genomes]
rs2609022	0.88[AFR][1000 genomes]
rs2609024	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2609025	1.00[AFR][1000 genomes]
rs2609028	0.82[AFR][1000 genomes]
rs2609035	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2609036	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2609037	0.88[AFR][1000 genomes]
rs2675769	1.00[AFR][1000 genomes]
rs2675772	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2675773	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2675774	1.00[AFR][1000 genomes]
rs2675784	0.82[AFR][1000 genomes]
rs2675787	0.88[AFR][1000 genomes]
rs2675788	0.88[AFR][1000 genomes]
rs2675789	0.88[AFR][1000 genomes]
rs2675790	0.88[AFR][1000 genomes]
rs2675791	0.88[AFR][1000 genomes]
rs2675792	0.88[AFR][1000 genomes]
rs2675793	0.88[AFR][1000 genomes]
rs2675794	0.88[AFR][1000 genomes]
rs2675799	0.82[AFR][1000 genomes]
rs2675800	0.88[AFR][1000 genomes]
rs2675802	1.00[AFR][1000 genomes]
rs2675804	0.88[AFR][1000 genomes]
rs2675806	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2675809	1.00[AFR][1000 genomes]
rs2675810	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2675812	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2675813	0.88[AFR][1000 genomes]
rs2675816	0.90[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap]
rs2675819	0.82[AFR][1000 genomes]
rs2675821	0.82[AFR][1000 genomes]
rs2675822	0.82[AFR][1000 genomes]
rs2675825	0.82[AFR][1000 genomes]
rs2675827	0.88[AFR][1000 genomes]
rs2675828	0.88[AFR][1000 genomes]
rs2675829	0.88[AFR][1000 genomes]
rs2675830	0.88[AFR][1000 genomes]
rs2675832	0.88[AFR][1000 genomes]
rs2675834	0.88[AFR][1000 genomes]
rs2675835	0.82[AFR][1000 genomes]
rs2675836	0.88[AFR][1000 genomes]
rs2675837	0.88[AFR][1000 genomes]
rs2883652	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs3101107	0.88[AFR][1000 genomes]
rs3106826	0.88[AFR][1000 genomes]
rs34048522	0.88[AFR][1000 genomes]
rs34202063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34266990	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34267788	0.90[EUR][1000 genomes]
rs34320663	0.88[AFR][1000 genomes]
rs34390947	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34399912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34434811	0.90[EUR][1000 genomes]
rs34492910	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34576538	0.88[AFR][1000 genomes]
rs34584636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34632971	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34756253	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34762184	1.00[YRI][hapmap]
rs34773360	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34846525	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34866096	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs34889917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35098074	0.88[AFR][1000 genomes]
rs35140911	1.00[AFR][1000 genomes]
rs35170043	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs35429015	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35531616	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35566897	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs35655236	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35690191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35714264	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35864641	0.90[EUR][1000 genomes]
rs36011798	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs36057916	0.82[AFR][1000 genomes]
rs3792325	0.81[CEU][hapmap]
rs3804627	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs3804628	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs391620	0.86[EUR][1000 genomes]
rs3940822	0.88[AFR][1000 genomes]
rs3943212	0.81[CEU][hapmap]
rs398703	0.85[EUR][1000 genomes]
rs399484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399971	0.88[EUR][1000 genomes]
rs414171	0.81[CEU][hapmap]
rs417592	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs441516	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4429624	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs443030	0.89[EUR][1000 genomes]
rs443436	0.81[CEU][hapmap]
rs448028	0.81[CEU][hapmap]
rs4482663	0.85[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs4533647	0.90[EUR][1000 genomes]
rs453570	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs4688702	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4688703	1.00[AFR][1000 genomes]
rs4688719	0.81[CEU][hapmap]
rs490634	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5000953	1.00[AFR][1000 genomes]
rs56837922	0.94[AFR][1000 genomes]
rs59909173	0.94[AFR][1000 genomes]
rs59949730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61142614	0.87[AFR][1000 genomes]
rs61549968	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs616589	0.81[CEU][hapmap]
rs622502	0.88[EUR][1000 genomes]
rs628081	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6446214	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs6446215	1.00[AFR][1000 genomes]
rs66472954	0.82[AFR][1000 genomes]
rs66867590	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs67316637	0.88[AFR][1000 genomes]
rs67410403	0.88[AFR][1000 genomes]
rs67425923	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67588094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67672341	0.82[AFR][1000 genomes]
rs6768300	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6775012	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6778680	0.86[CEU][hapmap]
rs67813889	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6784166	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6787521	1.00[CEU][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6791880	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs68191286	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs695170	0.90[EUR][1000 genomes]
rs71326937	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71326944	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs71326945	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs71329007	0.88[AFR][1000 genomes]
rs71329008	0.82[AFR][1000 genomes]
rs71329014	0.82[AFR][1000 genomes]
rs728901	0.81[CEU][hapmap]
rs73072418	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs73072438	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs73072442	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73082948	0.88[EUR][1000 genomes]
rs73833888	0.88[AFR][1000 genomes]
rs73835540	0.94[AFR][1000 genomes]
rs750453	0.84[EUR][1000 genomes]
rs750510	0.93[CEU][hapmap]
rs7611428	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7629253	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7646236	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs7650574	0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7652260	0.83[EUR][1000 genomes]
rs7652715	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs809451	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs809454	0.86[EUR][1000 genomes]
rs900735	0.81[CEU][hapmap]
rs936405	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs936406	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9682401	0.81[CEU][hapmap]
rs9830920	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9838283	0.81[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs9839684	1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	esv3584502	chr3:50368278-50659741	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv432419	chr3:50388396-50637496	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1013225	chr3:50440826-50700448	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv536566	chr3:50440826-50700448	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
7	nsv984540	chr3:50473691-50669310	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv1012501	chr3:50483037-50679591	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv536567	chr3:50483037-50679591	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
10	nsv460533	chr3:50574213-50678151	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
11	nsv590273	chr3:50574213-50678151	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50608200-50637400	Weak transcription	Fetal Kidney	kidney
2	chr3:50623000-50636600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:50623200-50633800	Enhancers	Fetal Thymus	thymus
4	chr3:50628400-50633800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr3:50628600-50633600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr3:50628600-50635600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:50628600-50638200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr3:50628800-50633600	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr3:50628800-50633800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:50628800-50634000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:50628800-50637200	Weak transcription	A549	lung
12	chr3:50628800-50637400	Weak transcription	Brain Substantia Nigra	brain
13	chr3:50629000-50633200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr3:50629000-50634000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr3:50629000-50634000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr3:50629000-50637600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr3:50629800-50635600	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:50630400-50636600	Weak transcription	Ovary	ovary
19	chr3:50630400-50637200	Weak transcription	NHDF-Ad	bronchial
20	chr3:50630600-50635600	Weak transcription	Fetal Lung	lung
21	chr3:50630600-50636600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:50630600-50636800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:50630600-50637200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:50630600-50637400	Weak transcription	Stomach Mucosa	stomach
25	chr3:50630800-50633400	Weak transcription	K562	blood
26	chr3:50630800-50634800	Enhancers	Dnd41	blood
27	chr3:50630800-50636000	Weak transcription	Esophagus	oesophagus
28	chr3:50630800-50636000	Weak transcription	Right Ventricle	heart
29	chr3:50630800-50636200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr3:50630800-50636400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:50630800-50636400	Weak transcription	Fetal Stomach	stomach
32	chr3:50630800-50636600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr3:50630800-50636800	Weak transcription	Gastric	stomach
34	chr3:50630800-50637000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr3:50631000-50633000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr3:50631000-50636600	Weak transcription	Fetal Muscle Leg	muscle
37	chr3:50631000-50637000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:50631200-50633000	Weak transcription	Fetal Intestine Small	intestine
39	chr3:50631600-50633000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr3:50631800-50636600	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr3:50632000-50636600	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr3:50632000-50636800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr3:50632200-50633600	Weak transcription	HepG2	liver
44	chr3:50632200-50635800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:50632200-50636000	Weak transcription	Lung	lung
46	chr3:50632200-50636000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr3:50632200-50636400	Weak transcription	Pancreas	Pancrea
48	chr3:50632200-50636400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr3:50632200-50636600	Weak transcription	Left Ventricle	heart
50	chr3:50632200-50637400	Weak transcription	Psoas Muscle	Psoas

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