Variant report

Variant	rs7652260
Chromosome Location	chr3:50571585-50571586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:50564906..50567143-chr3:50571268..50573066,2	MCF-7	breast:
2	chr3:50566678..50573015-chr3:50574866..50578180,7	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1034405	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs129310	0.89[CEU][hapmap]
rs13076850	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13083004	0.82[EUR][1000 genomes]
rs13084476	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13091933	0.94[CEU][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13094336	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs175634	0.83[CEU][hapmap]
rs17787569	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs201194	0.83[CEU][hapmap]
rs201196	0.82[EUR][1000 genomes]
rs201198	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2227280	0.83[EUR][1000 genomes]
rs2232248	0.89[CEU][hapmap]
rs2232253	0.83[EUR][1000 genomes]
rs2236958	0.81[CEU][hapmap]
rs2269505	0.89[CEU][hapmap]
rs2269507	0.83[EUR][1000 genomes]
rs2355321	0.83[EUR][1000 genomes]
rs2355323	0.90[CEU][hapmap]
rs34202063	0.83[EUR][1000 genomes]
rs34267788	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34399912	0.83[EUR][1000 genomes]
rs34434811	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34584636	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs34756253	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34889917	0.83[EUR][1000 genomes]
rs35655236	0.82[EUR][1000 genomes]
rs35690191	0.82[EUR][1000 genomes]
rs35714264	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35864641	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35908181	0.81[ASN][1000 genomes]
rs35986136	0.84[YRI][hapmap]
rs3804627	0.89[CEU][hapmap]
rs399484	0.89[CEU][hapmap]
rs417592	0.89[CEU][hapmap]
rs441516	0.90[CEU][hapmap]
rs4533647	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs453570	0.89[CEU][hapmap]
rs490634	0.84[CEU][hapmap]
rs59949730	0.83[EUR][1000 genomes]
rs628081	0.95[CEU][hapmap]
rs67425923	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67588094	0.83[EUR][1000 genomes]
rs67813889	0.81[EUR][1000 genomes]
rs6784166	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6787521	0.90[CEU][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]
rs6807916	0.84[YRI][hapmap]
rs71326937	0.83[EUR][1000 genomes]
rs73082948	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs750510	0.89[CEU][hapmap]
rs7646236	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523662	chr3:50144951-50584999	Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
3	nsv470561	chr3:50158774-50584999	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	99 gene(s)	inside rSNPs	diseases
4	nsv876770	chr3:50158774-50609624	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	nsv1001993	chr3:50187646-50640808	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
6	esv3584502	chr3:50368278-50659741	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
7	nsv432419	chr3:50388396-50637496	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv1013225	chr3:50440826-50700448	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
9	nsv536566	chr3:50440826-50700448	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
10	nsv984540	chr3:50473691-50669310	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv1012501	chr3:50483037-50679591	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv536567	chr3:50483037-50679591	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv460532	chr3:50536273-50616049	Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases
14	nsv590272	chr3:50536273-50616049	Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50567600-50574400	Weak transcription	Spleen	Spleen
2	chr3:50569400-50571600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
3	chr3:50569800-50572000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:50569800-50573000	Bivalent Enhancer	Fetal Stomach	stomach
5	chr3:50570200-50572000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:50570200-50572600	Bivalent Enhancer	Fetal Intestine Large	intestine
7	chr3:50570200-50572800	Enhancers	Fetal Intestine Small	intestine
8	chr3:50570200-50575000	Weak transcription	Fetal Kidney	kidney
9	chr3:50570200-50576400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr3:50570400-50571600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:50570400-50571800	Enhancers	Brain Germinal Matrix	brain
12	chr3:50570600-50571600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:50570600-50571600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
14	chr3:50570600-50571800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:50570600-50571800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr3:50570800-50571600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr3:50570800-50572600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr3:50570800-50573000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr3:50571000-50572400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:50571200-50573000	Enhancers	Fetal Muscle Leg	muscle
21	chr3:50571400-50571800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr3:50571400-50572000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr3:50571400-50572000	Enhancers	Fetal Lung	lung
24	chr3:50571400-50572400	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr3:50571400-50576400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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