Variant report

Variant	rs175634
Chromosome Location	chr3:50644134-50644135
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:18)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:18 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:50640029-50645867	K562	blood:	n/a	n/a
2	PML	chr3:50640863-50644823	K562	blood:	n/a	n/a
3	POLR2A	chr3:50644059-50646236	K562	blood:	n/a	n/a
4	POLR2A	chr3:50638521-50651780	K562	blood:	n/a	n/a
5	POLR2A	chr3:50637018-50651777	K562	blood:	n/a	n/a
6	TBL1XR1	chr3:50644130-50644795	K562	blood:	n/a	n/a
7	POLR2A	chr3:50640734-50651849	K562	blood:	n/a	n/a
8	CCNT2	chr3:50644071-50644423	K562	blood:	n/a	n/a
9	POLR2A	chr3:50643993-50644350	K562	blood:	n/a	n/a
10	POLR2A	chr3:50640690-50645746	K562	blood:	n/a	n/a
11	HMGN3	chr3:50644093-50644275	K562	blood:	n/a	n/a
12	TEAD4	chr3:50641959-50644504	K562	blood:	n/a	n/a
13	UBTF	chr3:50644109-50646149	K562	blood:	n/a	n/a
14	MAZ	chr3:50644123-50644223	K562	blood:	n/a	n/a
15	POLR2A	chr3:50640301-50651577	K562	blood:	n/a	n/a
16	POLR2A	chr3:50638318-50650569	PBDE	blood:	n/a	n/a
17	POLR2A	chr3:50643994-50644456	K562	blood:	n/a	n/a
18	POLR2A	chr3:50640594-50651774	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:50643169..50645123-chr3:50685747..50687888,2	MCF-7	breast:
2	chr3:50599337..50613537-chr3:50634306..50660129,118	MCF-7	breast:
3	chr3:50613663..50623986-chr3:50635558..50652363,41	MCF-7	breast:
4	chr3:50641854..50644392-chr3:51427006..51429676,2	MCF-7	breast:
5	chr3:50595775..50597292-chr3:50644098..50646592,2	MCF-7	breast:

No data

Variant related genes	Relation type
MAPKAPK3	TF binding region
ENSG00000114735	Chromatin interaction
ENSG00000088543	Chromatin interaction
ENSG00000179837	Chromatin interaction

Extended variants
information (count: 169 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:159)

rs_ID	r²[population]
rs1013233	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1034405	0.94[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs1077215	0.83[CHD][hapmap]
rs11130252	0.82[EUR][1000 genomes]
rs11130255	0.83[CEU][hapmap]
rs11710858	0.83[CEU][hapmap]
rs11712367	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs11716398	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11719998	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12487821	0.83[CHD][hapmap]
rs12489607	0.83[CHD][hapmap]
rs12491425	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12493985	0.87[EUR][1000 genomes]
rs12495399	0.83[CHD][hapmap]
rs12639126	0.87[CEU][hapmap]
rs129310	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13075377	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs13076850	0.86[EUR][1000 genomes]
rs13083004	0.86[EUR][1000 genomes]
rs13084476	0.82[EUR][1000 genomes]
rs13091933	0.89[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs13094336	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs13094785	0.83[CEU][hapmap]
rs13095920	0.83[CEU][hapmap]
rs13096264	0.83[CEU][hapmap]
rs13096772	0.82[CEU][hapmap]
rs1385025	1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1458386	0.83[CEU][hapmap]
rs1458387	0.83[CEU][hapmap]
rs1463496	0.83[CEU][hapmap]
rs1463497	0.83[CEU][hapmap]
rs1563684	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17051043	0.83[CHD][hapmap]
rs17051045	0.83[CHD][hapmap]
rs17051403	0.83[CHD][hapmap]
rs17787569	0.94[CEU][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs1824280	0.83[CEU][hapmap]
rs1824281	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1966921	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1971976	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs201193	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs201194	1.00[CEU][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs201196	0.89[EUR][1000 genomes]
rs201198	0.94[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs2035484	0.83[CHD][hapmap]
rs2086827	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2125366	0.83[CEU][hapmap]
rs2125369	0.82[CEU][hapmap]
rs2168866	0.83[CEU][hapmap]
rs2170840	0.81[CHD][hapmap]
rs2199050	0.83[CEU][hapmap]
rs2227280	0.87[EUR][1000 genomes]
rs2227292	0.81[CHD][hapmap]
rs2232248	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2232253	0.87[EUR][1000 genomes]
rs2239751	0.81[CHD][hapmap]
rs2239752	0.81[CHD][hapmap]
rs2262810	0.83[CEU][hapmap]
rs2269505	0.83[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2269507	0.87[EUR][1000 genomes]
rs2285090	0.81[CHD][hapmap]
rs2355321	0.87[EUR][1000 genomes]
rs2355323	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2608988	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs2609001	0.83[CEU][hapmap]
rs2609006	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs2609024	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs2609036	0.83[CEU][hapmap]
rs2675772	0.83[CEU][hapmap]
rs2675773	0.94[CEU][hapmap]
rs2675806	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs2675810	0.86[TSI][hapmap]
rs2675812	0.83[CEU][hapmap]
rs2675816	0.82[CEU][hapmap]
rs2883652	0.83[CEU][hapmap]
rs34202063	0.87[EUR][1000 genomes]
rs34399912	0.87[EUR][1000 genomes]
rs34584636	0.94[CEU][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs34756253	0.82[EUR][1000 genomes]
rs34848480	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs34889917	0.87[EUR][1000 genomes]
rs35655236	0.86[EUR][1000 genomes]
rs35690191	0.86[EUR][1000 genomes]
rs35714264	0.83[EUR][1000 genomes]
rs375544	0.94[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3792325	0.83[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3792328	0.94[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs3804627	0.88[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3804628	0.83[CEU][hapmap]
rs3804632	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs391620	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3943212	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs396302	0.94[ASW][hapmap];0.83[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs398703	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs399484	0.94[CEU][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs399971	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs414171	0.83[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417592	0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs441516	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4429624	0.83[CEU][hapmap]
rs443030	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs443436	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs448028	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4482663	0.87[CEU][hapmap]
rs4485709	0.88[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap]
rs453570	0.94[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4688696	0.83[CHD][hapmap]
rs4688702	0.83[CEU][hapmap]
rs4688712	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs490634	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs59949730	0.87[EUR][1000 genomes]
rs616589	0.83[CEU][hapmap];0.90[CHB][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs616689	0.83[CHD][hapmap]
rs622502	0.83[EUR][1000 genomes]
rs628081	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6446212	0.94[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.80[ASN][1000 genomes]
rs6446213	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6446220	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs6446222	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs67588094	0.87[EUR][1000 genomes]
rs6768300	0.82[EUR][1000 genomes]
rs6775012	0.81[CEU][hapmap]
rs6776224	0.82[CEU][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6778680	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs6779819	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs67813889	0.90[EUR][1000 genomes]
rs6784166	0.83[EUR][1000 genomes]
rs6787521	0.94[CEU][hapmap];0.86[EUR][1000 genomes]
rs6791880	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs6796769	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.96[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs695170	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71326937	0.87[EUR][1000 genomes]
rs728901	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs743753	0.83[CHD][hapmap]
rs750453	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs750510	0.84[CEU][hapmap];0.87[CHD][hapmap];0.88[TSI][hapmap];0.87[EUR][1000 genomes]
rs751851	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7611428	0.83[CEU][hapmap]
rs7615703	1.00[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs762889	0.81[CHD][hapmap]
rs7629253	0.83[CEU][hapmap]
rs7635666	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7645212	0.81[AMR][1000 genomes]
rs7646236	0.88[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7650574	0.83[CEU][hapmap]
rs7652715	0.83[CEU][hapmap]
rs808149	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs809451	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs809454	0.86[CHB][hapmap];0.85[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs813243	0.94[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs876104	0.83[CHD][hapmap]
rs900735	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs936405	0.83[CEU][hapmap]
rs936406	0.83[CEU][hapmap]
rs9682401	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9825535	1.00[ASW][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs9826757	0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9838283	0.83[CEU][hapmap]
rs9879397	0.83[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821728	chr3:50156142-50657253	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	esv3584502	chr3:50368278-50659741	Strong transcription Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1013225	chr3:50440826-50700448	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv536566	chr3:50440826-50700448	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv984540	chr3:50473691-50669310	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv1012501	chr3:50483037-50679591	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv536567	chr3:50483037-50679591	Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv460533	chr3:50574213-50678151	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv590273	chr3:50574213-50678151	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
10	nsv482083	chr3:50643886-50649262	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs175634	MAPKAPK3	cis	multi-tissue	Pritchard

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50636800-50646000	Genic enhancers	Fetal Intestine Small	intestine
2	chr3:50638800-50647400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:50639000-50648000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:50639400-50648000	Weak transcription	Fetal Brain Female	brain
5	chr3:50639600-50646800	Genic enhancers	Spleen	Spleen
6	chr3:50639600-50648000	Weak transcription	Fetal Brain Male	brain
7	chr3:50639800-50644200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:50639800-50644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:50639800-50648000	Weak transcription	HUVEC	blood vessel
10	chr3:50639800-50648200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:50639800-50648200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr3:50639800-50648200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:50640000-50644200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:50640000-50644600	Weak transcription	Thymus	Thymus
15	chr3:50640000-50647000	Genic enhancers	Fetal Muscle Leg	muscle
16	chr3:50640000-50648000	Weak transcription	Brain Substantia Nigra	brain
17	chr3:50640000-50648200	Weak transcription	NH-A	brain
18	chr3:50640200-50644200	Weak transcription	NHLF	lung
19	chr3:50640200-50646200	Enhancers	Fetal Heart	heart
20	chr3:50640200-50647600	Weak transcription	Brain Anterior Caudate	brain
21	chr3:50640200-50647600	Genic enhancers	Fetal Muscle Trunk	muscle
22	chr3:50640400-50644200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:50640400-50646200	Genic enhancers	Primary monocytes fromperipheralblood	blood
24	chr3:50640400-50646200	Genic enhancers	Fetal Intestine Large	intestine
25	chr3:50640400-50647200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:50640400-50648200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr3:50640400-50648200	Weak transcription	Osteobl	bone
28	chr3:50640600-50644600	Strong transcription	Fetal Stomach	stomach
29	chr3:50640600-50646000	Genic enhancers	Monocytes-CD14+_RO01746	blood
30	chr3:50640600-50649200	Transcr. at gene 5' and 3'	Dnd41	blood
31	chr3:50640800-50646200	Weak transcription	Fetal Kidney	kidney
32	chr3:50641200-50644600	Weak transcription	HMEC	breast
33	chr3:50641200-50645800	Strong transcription	Fetal Lung	lung
34	chr3:50641200-50646600	Genic enhancers	Lung	lung
35	chr3:50641200-50647000	Weak transcription	Small Intestine	intestine
36	chr3:50641400-50646400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr3:50641600-50644600	Strong transcription	Placenta Amnion	Placenta Amnion
38	chr3:50641600-50645200	Genic enhancers	Adipose Nuclei	Adipose
39	chr3:50641600-50645200	Genic enhancers	Esophagus	oesophagus
40	chr3:50641600-50646000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr3:50641600-50646000	Genic enhancers	Pancreas	Pancrea
42	chr3:50641600-50647000	Genic enhancers	Gastric	stomach
43	chr3:50641600-50647800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:50641600-50648400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
45	chr3:50641800-50644400	Strong transcription	Sigmoid Colon	Sigmoid Colon
46	chr3:50641800-50649200	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
47	chr3:50642000-50645200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr3:50642200-50644800	Genic enhancers	Colonic Mucosa	Colon
49	chr3:50642200-50645000	Weak transcription	Stomach Mucosa	stomach
50	chr3:50642200-50645800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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