Variant report

Variant	rs2675806
Chromosome Location	chr3:50824229-50824230
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CISH-3	chr3:50824105-50824701	NONHSAT089856

Extended variants
information (count: 358 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:358)

rs_ID	r²[population]
rs1013233	0.83[EUR][1000 genomes]
rs10510754	0.94[CEU][hapmap]
rs10865962	0.82[EUR][1000 genomes]
rs11130252	0.88[AFR][1000 genomes]
rs11130255	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs11130259	0.82[EUR][1000 genomes]
rs11130263	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs11710858	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11712367	0.94[CEU][hapmap]
rs11917538	0.94[CEU][hapmap]
rs11921011	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs12185906	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12639126	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs13062018	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13064199	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13065995	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13069365	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap]
rs13072085	0.94[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13075344	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13075377	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13079136	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13079565	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13084476	0.88[AFR][1000 genomes]
rs13084771	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13085096	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13085320	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13085759	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13085827	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13086545	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13086922	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13088041	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13088434	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13088988	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13089719	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs13091933	0.88[AFR][1000 genomes]
rs13092418	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13093289	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs13093798	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13094336	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs13094785	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs13095706	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13095920	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs13096264	1.00[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13096268	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13096772	0.94[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13097480	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13099712	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13100403	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1379873	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1379874	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1379875	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1385025	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs1458386	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1458387	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1463496	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs1463497	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1471177	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes]
rs1531271	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1563683	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1563684	0.83[EUR][1000 genomes]
rs1598927	0.89[EUR][1000 genomes]
rs1598928	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs175634	0.83[CEU][hapmap];0.86[TSI][hapmap]
rs17660179	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17660513	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17787569	0.88[AFR][1000 genomes]
rs1824280	1.00[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1824281	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs1841067	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs1902960	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1947607	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1966920	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs1966921	0.83[EUR][1000 genomes]
rs1971976	0.83[EUR][1000 genomes]
rs1975834	0.91[EUR][1000 genomes]
rs201194	0.83[CEU][hapmap];0.84[GIH][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap]
rs201198	0.90[MEX][hapmap];0.86[TSI][hapmap]
rs2045510	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2045511	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2061388	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2085580	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs2085582	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2085584	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2085585	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2085586	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2085587	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2085588	0.92[EUR][1000 genomes]
rs2086827	0.83[EUR][1000 genomes]
rs2125364	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2125366	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2125369	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2168863	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2168865	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2168866	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2199050	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2219431	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.81[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2219432	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2219433	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2227280	0.88[AFR][1000 genomes]
rs2232253	0.88[AFR][1000 genomes]
rs2262810	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2269507	0.88[AFR][1000 genomes]
rs2355321	0.88[AFR][1000 genomes]
rs2355341	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2355692	0.96[EUR][1000 genomes]
rs2355696	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2355702	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2355705	0.95[EUR][1000 genomes]
rs2608988	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.89[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs2608989	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2608990	0.90[EUR][1000 genomes]
rs2608993	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2608995	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2608997	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2608999	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2609001	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2609002	0.88[EUR][1000 genomes]
rs2609005	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2609006	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2609016	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2609018	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2609019	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2609020	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2609021	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2609022	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2609024	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2609025	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2609028	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2609031	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes]
rs2609035	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2609036	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2609037	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675769	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2675771	0.99[EUR][1000 genomes]
rs2675772	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2675773	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2675774	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2675784	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2675787	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675788	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675789	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675790	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675791	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675792	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675793	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675794	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675799	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675800	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675802	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2675804	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675808	0.89[EUR][1000 genomes]
rs2675809	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675810	1.00[ASW][hapmap];0.94[CEU][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2675812	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2675813	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2675816	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2675819	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2675821	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2675822	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2675825	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2675827	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs2675828	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675829	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2675830	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675832	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675834	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675835	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675836	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2675837	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs28762180	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2883652	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3101107	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3106826	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34002537	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34006781	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34040634	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34048522	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs34075959	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34184643	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34202063	0.88[AFR][1000 genomes]
rs34266990	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34307982	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34320663	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34390947	0.88[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs34399912	0.88[AFR][1000 genomes]
rs34456131	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34481683	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34492910	0.91[EUR][1000 genomes]
rs34576538	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34584636	0.88[AFR][1000 genomes]
rs34602347	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34628582	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34632971	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34640865	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34712521	0.96[EUR][1000 genomes]
rs34756253	0.88[AFR][1000 genomes]
rs34773360	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs34786937	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs34836308	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs34846525	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs34848480	0.82[EUR][1000 genomes]
rs34855107	0.89[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34866096	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34889917	0.88[AFR][1000 genomes]
rs34900426	0.87[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs35082196	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35098074	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs35121433	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35122553	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35140911	0.88[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs35150418	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35170043	0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35190976	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35193996	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35273485	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35429015	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35481031	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35492420	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35499413	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35531616	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35566897	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35655236	0.88[AFR][1000 genomes]
rs35690191	0.88[AFR][1000 genomes]
rs35693100	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs35842302	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35875816	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs36011798	0.91[EUR][1000 genomes]
rs36018544	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs36056105	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs36057916	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs36110549	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs36177541	0.82[AFR][1000 genomes]
rs375544	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs3792325	1.00[CEU][hapmap]
rs3792328	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs3804628	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs3940822	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3943212	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs396302	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4131887	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs4132022	0.94[CEU][hapmap];1.00[YRI][hapmap]
rs414171	1.00[CEU][hapmap]
rs419160	1.00[CHB][hapmap]
rs4429624	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs443436	1.00[CEU][hapmap]
rs4452323	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs448028	1.00[CEU][hapmap]
rs4482663	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4485709	0.94[CEU][hapmap]
rs4530518	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs453570	0.86[TSI][hapmap]
rs4688693	0.95[EUR][1000 genomes]
rs4688702	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs4688703	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs490634	0.83[CEU][hapmap]
rs5000953	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs55785224	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56837922	0.94[AFR][1000 genomes]
rs57378417	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs57642230	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs57732473	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs59769351	0.81[AFR][1000 genomes]
rs59909173	0.94[AFR][1000 genomes]
rs59949730	0.88[AFR][1000 genomes]
rs60292376	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs60898829	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs61142614	0.87[AFR][1000 genomes]
rs61549968	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs61638760	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs616589	1.00[CEU][hapmap]
rs6446210	0.90[EUR][1000 genomes]
rs6446212	1.00[CEU][hapmap];0.93[TSI][hapmap];0.83[EUR][1000 genomes]
rs6446213	1.00[CEU][hapmap];0.93[TSI][hapmap];0.82[EUR][1000 genomes]
rs6446214	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs6446215	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6446220	0.94[CEU][hapmap]
rs6446222	0.94[CEU][hapmap]
rs66472954	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs66684483	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs66792086	0.81[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs66867590	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs67211895	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs67316637	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs67410403	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs67445615	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs67588094	0.88[AFR][1000 genomes]
rs6763779	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6763990	0.84[EUR][1000 genomes]
rs67672341	0.94[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6770954	0.87[EUR][1000 genomes]
rs6771085	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6775012	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6776224	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs6778680	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs67794896	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6779819	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs67813889	0.88[AFR][1000 genomes]
rs67843425	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6787521	0.88[AFR][1000 genomes]
rs67895930	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6791880	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs6795573	0.94[CEU][hapmap]
rs6796769	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs68096338	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6810241	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs68130118	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs68191286	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs71326944	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs71326945	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs71329007	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs71329008	0.94[AFR][1000 genomes]
rs71329014	0.94[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs71329017	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs71329021	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71329023	0.94[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71329039	0.83[EUR][1000 genomes]
rs728901	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs73072418	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73072438	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs73072442	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs73079191	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73081114	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73081144	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs73833888	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs73835540	0.94[AFR][1000 genomes]
rs7426759	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7428086	0.82[EUR][1000 genomes]
rs7429035	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7433217	0.94[CEU][hapmap]
rs751851	0.83[EUR][1000 genomes]
rs7611428	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes]
rs7615703	1.00[CEU][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs7623868	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7623976	1.00[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7627266	0.94[CEU][hapmap]
rs7629253	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7629809	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs7638082	0.94[CEU][hapmap]
rs7642158	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs7646236	0.86[TSI][hapmap]
rs7650574	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7652715	1.00[CEU][hapmap];1.00[GIH][hapmap];0.88[MEX][hapmap];0.93[TSI][hapmap];0.93[EUR][1000 genomes]
rs809451	1.00[CEU][hapmap]
rs813243	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs900735	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs936405	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs936406	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9682401	1.00[CEU][hapmap]
rs9813718	0.83[EUR][1000 genomes]
rs9823942	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9825535	0.94[CEU][hapmap]
rs9826757	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9838283	1.00[CEU][hapmap]
rs9839684	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9844519	0.95[EUR][1000 genomes]
rs9868870	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs9869945	0.94[CEU][hapmap]
rs9875961	0.94[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2675806	C3orf18	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50819400-50825200	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:50819400-50825600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:50821000-50825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:50821200-50827400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:50823400-50825800	Weak transcription	Brain Anterior Caudate	brain
6	chr3:50823800-50824400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr3:50823800-50824400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr3:50823800-50824600	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr3:50824200-50824400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:50824200-50824400	Enhancers	Brain Angular Gyrus	brain
11	chr3:50824200-50824400	Enhancers	Brain Cingulate Gyrus	brain
12	chr3:50824200-50824400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr3:50824200-50824400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

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