The 2.0 version of rSNPBase

Variant report

Variant rs59909173
Chromosome Location chr3:50665514-50665515
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:115 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:50655400-50677800 Weak transcription Aorta Aorta
2 chr3:50655600-50681200 Weak transcription Fetal Brain Female brain
3 chr3:50655800-50666000 Enhancers Fetal Heart heart
4 chr3:50656000-50675600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
5 chr3:50656000-50677800 Weak transcription Rectal Smooth Muscle rectum
6 chr3:50657600-50678200 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr3:50658400-50669000 Strong transcription Fetal Stomach stomach
8 chr3:50659400-50665800 Enhancers Right Atrium heart
9 chr3:50660200-50666200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
10 chr3:50660200-50666200 Enhancers Lung lung
11 chr3:50660200-50671600 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr3:50660200-50677000 Weak transcription Liver Liver
13 chr3:50661000-50665800 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr3:50661200-50668800 Strong transcription Fetal Intestine Small intestine
15 chr3:50661400-50671600 Enhancers Left Ventricle heart
16 chr3:50661600-50667200 Enhancers iPS DF 19.11 Cell Line embryonic stem cell
17 chr3:50661600-50670600 Enhancers Primary T killer naive cells fromperipheralblood blood
18 chr3:50661600-50674400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
19 chr3:50661600-50675800 Enhancers Primary T helper cells fromperipheralblood blood
20 chr3:50661600-50688200 Weak transcription Small Intestine intestine
21 chr3:50661800-50666600 Enhancers Placenta Placenta
22 chr3:50661800-50669000 Strong transcription Fetal Intestine Large intestine
23 chr3:50662000-50668600 Genic enhancers Spleen Spleen
24 chr3:50662200-50666400 Enhancers Primary T cells from cord blood blood
25 chr3:50662200-50667600 Weak transcription K562 blood
26 chr3:50662200-50669000 Genic enhancers Primary T cells fromperipheralblood blood
27 chr3:50662400-50665600 Enhancers Primary T helper 17 cells PMA-I stimulated --
28 chr3:50662400-50670000 Weak transcription Fetal Lung lung
29 chr3:50662400-50671000 Enhancers Primary T helper naive cells from peripheral blood blood
30 chr3:50662400-50672000 Enhancers Primary hematopoietic stem cells blood
31 chr3:50662400-50678200 Weak transcription H9 Cell Line embryonic stem cell
32 chr3:50662600-50667400 Weak transcription HepG2 liver
33 chr3:50662600-50667600 Enhancers Primary T helper cells PMA-I stimulated --
34 chr3:50662600-50675800 Enhancers Primary T helper naive cells fromperipheralblood blood
35 chr3:50662800-50665600 Enhancers Primary monocytes fromperipheralblood blood
36 chr3:50662800-50666400 Enhancers Primary T regulatory cells fromperipheralblood blood
37 chr3:50663200-50667200 Weak transcription Rectal Mucosa Donor 29 rectum
38 chr3:50663200-50667600 Weak transcription Rectal Mucosa Donor 31 rectum
39 chr3:50663200-50667800 Enhancers Primary neutrophils fromperipheralblood blood
40 chr3:50663200-50669200 Genic enhancers Fetal Thymus thymus
41 chr3:50663200-50677600 Weak transcription HUES48 Cell Line embryonic stem cell
42 chr3:50663400-50665800 Genic enhancers Primary Natural Killer cells fromperipheralblood blood
43 chr3:50663400-50668600 Weak transcription Primary B cells from peripheral blood blood
44 chr3:50663400-50690000 Weak transcription ES-WA7 Cell Line embryonic stem cell
45 chr3:50663600-50667200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
46 chr3:50663800-50666000 Enhancers Thymus Thymus
47 chr3:50663800-50669200 Genic enhancers Primary mononuclear cells fromperipheralblood Blood
48 chr3:50664000-50666400 Genic enhancers Fetal Muscle Trunk muscle
49 chr3:50664000-50669000 Weak transcription Fetal Muscle Leg muscle
50 chr3:50664200-50667000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015