Variant report

Variant	rs1824281
Chromosome Location	chr3:50750145-50750146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 306 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:306)

rs_ID	r²[population]
rs1013233	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10510754	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs11130255	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11130263	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11710858	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11712367	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11716398	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11917538	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.80[AFR][1000 genomes]
rs11921011	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs12639126	1.00[CEU][hapmap]
rs129310	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs13065995	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13072085	0.85[EUR][1000 genomes]
rs13075344	0.88[EUR][1000 genomes]
rs13075377	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13079136	0.81[EUR][1000 genomes]
rs13079565	0.81[EUR][1000 genomes]
rs13084771	0.87[EUR][1000 genomes]
rs13085096	0.88[EUR][1000 genomes]
rs13085320	0.81[EUR][1000 genomes]
rs13085759	0.81[EUR][1000 genomes]
rs13086922	0.81[EUR][1000 genomes]
rs13088041	0.81[EUR][1000 genomes]
rs13088434	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13088988	0.81[EUR][1000 genomes]
rs13089719	0.90[EUR][1000 genomes]
rs13092418	0.81[EUR][1000 genomes]
rs13093798	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs13094336	0.81[CEU][hapmap]
rs13094785	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs13095706	0.81[EUR][1000 genomes]
rs13095920	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs13096264	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13096268	0.81[EUR][1000 genomes]
rs13096772	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs13097480	0.81[EUR][1000 genomes]
rs13099712	0.81[EUR][1000 genomes]
rs13100403	0.81[EUR][1000 genomes]
rs1379873	0.87[EUR][1000 genomes]
rs1379874	0.87[EUR][1000 genomes]
rs1379875	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1385025	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1458385	0.82[AFR][1000 genomes]
rs1458386	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs1458387	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1463496	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1463497	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1471177	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1531271	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1563683	0.87[EUR][1000 genomes]
rs1563684	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1598926	0.85[AFR][1000 genomes]
rs1598927	0.88[EUR][1000 genomes]
rs1598928	0.87[EUR][1000 genomes]
rs175634	0.83[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17660179	0.83[EUR][1000 genomes]
rs17660513	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1824280	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1841067	0.87[EUR][1000 genomes]
rs1902960	0.87[EUR][1000 genomes]
rs1947607	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1966920	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs1966921	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971976	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1975834	0.83[EUR][1000 genomes]
rs201193	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs201194	0.83[CEU][hapmap]
rs2045510	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2045511	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2061388	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2085580	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2085582	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2085584	0.87[EUR][1000 genomes]
rs2085585	0.87[EUR][1000 genomes]
rs2085586	0.87[EUR][1000 genomes]
rs2085587	0.81[EUR][1000 genomes]
rs2086827	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2125366	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2125369	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2168863	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2168865	0.87[EUR][1000 genomes]
rs2168866	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2199050	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2219431	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2219432	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs2219433	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2232248	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2262810	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2269505	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs2355323	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap]
rs2355341	0.91[EUR][1000 genomes]
rs2355692	0.81[EUR][1000 genomes]
rs2355696	0.81[EUR][1000 genomes]
rs2355702	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2355705	0.82[EUR][1000 genomes]
rs2608988	1.00[CEU][hapmap]
rs2608989	0.83[EUR][1000 genomes]
rs2608990	0.87[EUR][1000 genomes]
rs2608993	0.81[EUR][1000 genomes]
rs2608995	0.81[EUR][1000 genomes]
rs2608997	0.81[EUR][1000 genomes]
rs2608999	0.83[EUR][1000 genomes]
rs2609001	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2609005	0.83[EUR][1000 genomes]
rs2609006	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2609016	0.87[EUR][1000 genomes]
rs2609018	0.87[EUR][1000 genomes]
rs2609019	0.87[EUR][1000 genomes]
rs2609020	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2609021	0.81[EUR][1000 genomes]
rs2609022	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2609024	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2609028	0.87[EUR][1000 genomes]
rs2609031	1.00[CEU][hapmap]
rs2609035	0.91[EUR][1000 genomes]
rs2609036	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs2609037	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2675769	0.83[EUR][1000 genomes]
rs2675771	0.83[EUR][1000 genomes]
rs2675772	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2675773	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2675774	0.83[EUR][1000 genomes]
rs2675784	0.87[EUR][1000 genomes]
rs2675787	0.81[EUR][1000 genomes]
rs2675788	0.81[EUR][1000 genomes]
rs2675789	0.81[EUR][1000 genomes]
rs2675790	0.81[EUR][1000 genomes]
rs2675791	0.81[EUR][1000 genomes]
rs2675792	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2675793	0.81[EUR][1000 genomes]
rs2675794	0.81[EUR][1000 genomes]
rs2675799	0.81[EUR][1000 genomes]
rs2675800	0.81[EUR][1000 genomes]
rs2675802	0.84[EUR][1000 genomes]
rs2675804	0.81[EUR][1000 genomes]
rs2675806	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2675809	0.81[EUR][1000 genomes]
rs2675810	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs2675812	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2675813	0.83[EUR][1000 genomes]
rs2675816	1.00[CEU][hapmap]
rs2675819	0.87[EUR][1000 genomes]
rs2675821	0.87[EUR][1000 genomes]
rs2675822	0.87[EUR][1000 genomes]
rs2675825	0.87[EUR][1000 genomes]
rs2675827	0.83[EUR][1000 genomes]
rs2675828	0.81[EUR][1000 genomes]
rs2675830	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2675832	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2675834	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2675835	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2675836	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2675837	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs28762180	0.81[EUR][1000 genomes]
rs2883652	1.00[CEU][hapmap]
rs3101107	0.81[EUR][1000 genomes]
rs3106826	0.81[EUR][1000 genomes]
rs34006781	0.81[EUR][1000 genomes]
rs34048522	0.83[EUR][1000 genomes]
rs34075959	0.81[EUR][1000 genomes]
rs34184643	0.81[EUR][1000 genomes]
rs34266990	0.88[EUR][1000 genomes]
rs34307982	0.81[EUR][1000 genomes]
rs34320663	0.81[EUR][1000 genomes]
rs34390947	0.88[EUR][1000 genomes]
rs34456131	0.81[EUR][1000 genomes]
rs34481683	0.81[EUR][1000 genomes]
rs34492910	0.90[EUR][1000 genomes]
rs34576538	0.81[EUR][1000 genomes]
rs34628582	0.81[EUR][1000 genomes]
rs34632971	0.87[EUR][1000 genomes]
rs34640865	0.81[EUR][1000 genomes]
rs34712521	0.81[EUR][1000 genomes]
rs34773360	0.91[EUR][1000 genomes]
rs34846525	0.87[EUR][1000 genomes]
rs34848480	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34866096	0.90[EUR][1000 genomes]
rs35082196	0.81[EUR][1000 genomes]
rs35121433	0.81[EUR][1000 genomes]
rs35122553	0.81[EUR][1000 genomes]
rs35140911	0.83[EUR][1000 genomes]
rs35150418	0.81[EUR][1000 genomes]
rs35170043	0.91[EUR][1000 genomes]
rs35190976	0.81[EUR][1000 genomes]
rs35193996	0.87[EUR][1000 genomes]
rs35429015	0.90[EUR][1000 genomes]
rs35492420	0.81[EUR][1000 genomes]
rs35499413	0.81[EUR][1000 genomes]
rs35531616	0.90[EUR][1000 genomes]
rs35566897	0.90[EUR][1000 genomes]
rs35842302	0.81[EUR][1000 genomes]
rs35875816	0.81[EUR][1000 genomes]
rs36011798	0.90[EUR][1000 genomes]
rs36018544	0.81[EUR][1000 genomes]
rs36057916	0.87[EUR][1000 genomes]
rs36110549	0.81[EUR][1000 genomes]
rs375544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3792325	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3792328	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3804627	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs3804628	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs3804632	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3943212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs396302	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4131887	0.81[EUR][1000 genomes]
rs414171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs417592	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap]
rs441516	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs4429624	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs443436	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4452323	0.81[EUR][1000 genomes]
rs448028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4482663	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs4485709	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs4530518	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs453570	1.00[CHB][hapmap];0.95[JPT][hapmap];0.80[YRI][hapmap]
rs4688693	0.82[EUR][1000 genomes]
rs4688702	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs4688703	0.87[EUR][1000 genomes]
rs490634	0.84[CEU][hapmap]
rs5000953	0.87[EUR][1000 genomes]
rs57642230	0.81[EUR][1000 genomes]
rs61549968	0.90[EUR][1000 genomes]
rs61638760	0.81[EUR][1000 genomes]
rs616589	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs628081	0.83[JPT][hapmap]
rs6446210	0.91[EUR][1000 genomes]
rs6446212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446213	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446214	0.94[CEU][hapmap]
rs6446215	0.87[EUR][1000 genomes]
rs6446220	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6446222	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs66472954	0.87[EUR][1000 genomes]
rs66684483	0.87[EUR][1000 genomes]
rs66867590	0.87[EUR][1000 genomes]
rs67211895	0.87[EUR][1000 genomes]
rs67316637	0.81[EUR][1000 genomes]
rs67410403	0.83[EUR][1000 genomes]
rs6763990	0.84[EUR][1000 genomes]
rs67672341	0.87[EUR][1000 genomes]
rs6770954	0.86[EUR][1000 genomes]
rs6771085	0.81[EUR][1000 genomes]
rs6775012	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6776224	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6778680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67794896	0.81[EUR][1000 genomes]
rs6779819	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67843425	0.81[EUR][1000 genomes]
rs67895930	0.81[EUR][1000 genomes]
rs6791880	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs6795573	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs6796769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs68096338	0.81[EUR][1000 genomes]
rs68130118	0.81[EUR][1000 genomes]
rs68191286	0.90[EUR][1000 genomes]
rs71326944	0.90[EUR][1000 genomes]
rs71326945	0.88[EUR][1000 genomes]
rs71329007	0.83[EUR][1000 genomes]
rs71329014	0.83[EUR][1000 genomes]
rs71329017	0.87[EUR][1000 genomes]
rs71329021	0.81[EUR][1000 genomes]
rs71329023	0.81[EUR][1000 genomes]
rs728901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73072418	0.90[EUR][1000 genomes]
rs73072438	0.89[EUR][1000 genomes]
rs73072442	0.90[EUR][1000 genomes]
rs73079191	0.81[EUR][1000 genomes]
rs73081114	0.81[EUR][1000 genomes]
rs73081144	0.81[EUR][1000 genomes]
rs751851	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7611428	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs7615703	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621650	0.81[ASN][1000 genomes]
rs7623868	0.81[EUR][1000 genomes]
rs7623976	0.81[EUR][1000 genomes]
rs7629253	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7635666	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7638082	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs7639828	0.85[AFR][1000 genomes]
rs7642158	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7645212	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7646236	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs7650574	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7652715	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs808149	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs809451	1.00[CEU][hapmap]
rs809454	0.86[CHB][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap]
rs813243	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs900735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs936405	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs936406	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs9682401	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9820606	0.87[ASN][1000 genomes]
rs9824444	0.84[ASN][1000 genomes]
rs9824522	0.89[ASN][1000 genomes]
rs9825535	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[ASN][1000 genomes]
rs9826757	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9831288	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs9838283	1.00[CEU][hapmap]
rs9839684	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs9859692	0.82[AFR][1000 genomes]
rs9867489	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9868870	0.81[EUR][1000 genomes]
rs9869945	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs9875961	0.94[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1824281	HEMK1	cis	Lymphoblastoid	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50746000-50752600	Weak transcription	Right Atrium	heart
2	chr3:50746200-50752200	Weak transcription	Brain Germinal Matrix	brain
3	chr3:50746600-50755400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:50746800-50752000	Weak transcription	Brain Hippocampus Middle	brain
5	chr3:50747000-50752400	Weak transcription	Brain Anterior Caudate	brain
6	chr3:50750000-50750400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links