Variant report

Variant	rs34848480
Chromosome Location	chr3:50701801-50701802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:50696283..50697970-chr3:50700544..50702875,2	K562	blood:

Extended variants
information (count: 302 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:302)

rs_ID	r²[population]
rs1013233	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130255	0.90[EUR][1000 genomes]
rs11130263	0.82[EUR][1000 genomes]
rs11710858	0.90[EUR][1000 genomes]
rs11712367	0.91[ASN][1000 genomes]
rs11716398	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11921011	0.82[EUR][1000 genomes]
rs11928733	0.80[ASN][1000 genomes]
rs12491425	0.80[AMR][1000 genomes]
rs129310	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs13065995	0.81[EUR][1000 genomes]
rs13072085	0.85[EUR][1000 genomes]
rs13075344	0.88[EUR][1000 genomes]
rs13075377	0.81[EUR][1000 genomes]
rs13079136	0.81[EUR][1000 genomes]
rs13079565	0.81[EUR][1000 genomes]
rs13084771	0.87[EUR][1000 genomes]
rs13085096	0.88[EUR][1000 genomes]
rs13085320	0.81[EUR][1000 genomes]
rs13085759	0.81[EUR][1000 genomes]
rs13088041	0.81[EUR][1000 genomes]
rs13088434	0.81[EUR][1000 genomes]
rs13088988	0.81[EUR][1000 genomes]
rs13089719	0.90[EUR][1000 genomes]
rs13092418	0.81[EUR][1000 genomes]
rs13093798	0.81[EUR][1000 genomes]
rs13094785	0.91[EUR][1000 genomes]
rs13095706	0.81[EUR][1000 genomes]
rs13095920	0.83[EUR][1000 genomes]
rs13096264	0.87[EUR][1000 genomes]
rs13096268	0.81[EUR][1000 genomes]
rs13096772	0.87[EUR][1000 genomes]
rs13097480	0.81[EUR][1000 genomes]
rs13099712	0.81[EUR][1000 genomes]
rs13100403	0.81[EUR][1000 genomes]
rs1379873	0.87[EUR][1000 genomes]
rs1379874	0.87[EUR][1000 genomes]
rs1379875	0.87[EUR][1000 genomes]
rs1385025	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458386	0.87[EUR][1000 genomes]
rs1458387	0.89[EUR][1000 genomes]
rs1463496	0.84[EUR][1000 genomes]
rs1463497	0.84[EUR][1000 genomes]
rs1471177	0.81[EUR][1000 genomes]
rs1531271	0.87[EUR][1000 genomes]
rs1563683	0.84[EUR][1000 genomes]
rs1563684	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1598926	0.80[ASN][1000 genomes]
rs1598927	0.88[EUR][1000 genomes]
rs1598928	0.87[EUR][1000 genomes]
rs175634	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17660179	0.83[EUR][1000 genomes]
rs17660513	0.81[EUR][1000 genomes]
rs1824280	0.84[EUR][1000 genomes]
rs1824281	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1841067	0.87[EUR][1000 genomes]
rs1902960	0.84[EUR][1000 genomes]
rs1947607	0.81[EUR][1000 genomes]
rs1966920	0.81[EUR][1000 genomes]
rs1966921	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1971976	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1975834	0.81[EUR][1000 genomes]
rs201193	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2045510	0.81[EUR][1000 genomes]
rs2045511	0.81[EUR][1000 genomes]
rs2061388	0.81[EUR][1000 genomes]
rs2085580	0.82[EUR][1000 genomes]
rs2085582	0.87[EUR][1000 genomes]
rs2085584	0.87[EUR][1000 genomes]
rs2085585	0.87[EUR][1000 genomes]
rs2085586	0.87[EUR][1000 genomes]
rs2085587	0.81[EUR][1000 genomes]
rs2086827	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2125366	0.84[EUR][1000 genomes]
rs2125369	0.89[EUR][1000 genomes]
rs2168863	0.81[EUR][1000 genomes]
rs2168865	0.87[EUR][1000 genomes]
rs2168866	0.87[EUR][1000 genomes]
rs2170840	0.86[AFR][1000 genomes]
rs2199050	0.83[EUR][1000 genomes]
rs2219431	0.87[EUR][1000 genomes]
rs2219432	0.87[EUR][1000 genomes]
rs2219433	0.88[EUR][1000 genomes]
rs2232248	0.82[AMR][1000 genomes]
rs2262810	0.83[EUR][1000 genomes]
rs2269505	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2355323	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2355341	0.89[EUR][1000 genomes]
rs2355350	0.80[ASN][1000 genomes]
rs2355692	0.81[EUR][1000 genomes]
rs2355696	0.81[EUR][1000 genomes]
rs2355702	0.88[EUR][1000 genomes]
rs2355705	0.82[EUR][1000 genomes]
rs2608989	0.83[EUR][1000 genomes]
rs2608990	0.87[EUR][1000 genomes]
rs2608993	0.81[EUR][1000 genomes]
rs2608995	0.81[EUR][1000 genomes]
rs2608997	0.81[EUR][1000 genomes]
rs2608999	0.83[EUR][1000 genomes]
rs2609001	0.83[EUR][1000 genomes]
rs2609005	0.83[EUR][1000 genomes]
rs2609006	0.83[EUR][1000 genomes]
rs2609016	0.87[EUR][1000 genomes]
rs2609018	0.87[EUR][1000 genomes]
rs2609019	0.87[EUR][1000 genomes]
rs2609020	0.81[EUR][1000 genomes]
rs2609021	0.81[EUR][1000 genomes]
rs2609022	0.81[EUR][1000 genomes]
rs2609024	0.83[EUR][1000 genomes]
rs2609028	0.87[EUR][1000 genomes]
rs2609035	0.89[EUR][1000 genomes]
rs2609036	0.89[EUR][1000 genomes]
rs2609037	0.81[EUR][1000 genomes]
rs2675769	0.83[EUR][1000 genomes]
rs2675771	0.83[EUR][1000 genomes]
rs2675772	0.83[EUR][1000 genomes]
rs2675773	0.83[EUR][1000 genomes]
rs2675774	0.83[EUR][1000 genomes]
rs2675784	0.87[EUR][1000 genomes]
rs2675787	0.81[EUR][1000 genomes]
rs2675788	0.81[EUR][1000 genomes]
rs2675789	0.81[EUR][1000 genomes]
rs2675790	0.81[EUR][1000 genomes]
rs2675791	0.81[EUR][1000 genomes]
rs2675792	0.81[EUR][1000 genomes]
rs2675793	0.81[EUR][1000 genomes]
rs2675794	0.81[EUR][1000 genomes]
rs2675799	0.81[EUR][1000 genomes]
rs2675800	0.81[EUR][1000 genomes]
rs2675802	0.82[EUR][1000 genomes]
rs2675804	0.81[EUR][1000 genomes]
rs2675806	0.82[EUR][1000 genomes]
rs2675809	0.81[EUR][1000 genomes]
rs2675810	0.83[EUR][1000 genomes]
rs2675812	0.83[EUR][1000 genomes]
rs2675813	0.83[EUR][1000 genomes]
rs2675819	0.87[EUR][1000 genomes]
rs2675821	0.87[EUR][1000 genomes]
rs2675822	0.87[EUR][1000 genomes]
rs2675825	0.87[EUR][1000 genomes]
rs2675827	0.83[EUR][1000 genomes]
rs2675828	0.81[EUR][1000 genomes]
rs2675830	0.81[EUR][1000 genomes]
rs2675832	0.81[EUR][1000 genomes]
rs2675834	0.81[EUR][1000 genomes]
rs2675835	0.81[EUR][1000 genomes]
rs2675836	0.81[EUR][1000 genomes]
rs2675837	0.81[EUR][1000 genomes]
rs28762180	0.81[EUR][1000 genomes]
rs3101107	0.81[EUR][1000 genomes]
rs3106826	0.81[EUR][1000 genomes]
rs34006781	0.81[EUR][1000 genomes]
rs34048522	0.83[EUR][1000 genomes]
rs34075959	0.81[EUR][1000 genomes]
rs34184643	0.81[EUR][1000 genomes]
rs34266990	0.88[EUR][1000 genomes]
rs34307982	0.81[EUR][1000 genomes]
rs34320663	0.81[EUR][1000 genomes]
rs34390947	0.88[EUR][1000 genomes]
rs34456131	0.81[EUR][1000 genomes]
rs34492910	0.90[EUR][1000 genomes]
rs34576538	0.81[EUR][1000 genomes]
rs34628582	0.81[EUR][1000 genomes]
rs34632971	0.87[EUR][1000 genomes]
rs34640865	0.81[EUR][1000 genomes]
rs34712521	0.81[EUR][1000 genomes]
rs34773360	0.89[EUR][1000 genomes]
rs34846525	0.87[EUR][1000 genomes]
rs34866096	0.90[EUR][1000 genomes]
rs35082196	0.81[EUR][1000 genomes]
rs35121433	0.81[EUR][1000 genomes]
rs35122553	0.81[EUR][1000 genomes]
rs35140911	0.83[EUR][1000 genomes]
rs35150418	0.81[EUR][1000 genomes]
rs35170043	0.89[EUR][1000 genomes]
rs35190976	0.81[EUR][1000 genomes]
rs35193996	0.87[EUR][1000 genomes]
rs35429015	0.90[EUR][1000 genomes]
rs35492420	0.81[EUR][1000 genomes]
rs35499413	0.81[EUR][1000 genomes]
rs35531616	0.90[EUR][1000 genomes]
rs35566897	0.90[EUR][1000 genomes]
rs35842302	0.81[EUR][1000 genomes]
rs35875816	0.81[EUR][1000 genomes]
rs36011798	0.90[EUR][1000 genomes]
rs36018544	0.81[EUR][1000 genomes]
rs36057916	0.87[EUR][1000 genomes]
rs36110549	0.81[EUR][1000 genomes]
rs375544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3792325	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3792328	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3804627	0.84[AMR][1000 genomes]
rs3804628	0.87[EUR][1000 genomes]
rs3804632	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3943212	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs396302	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs399971	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4131887	0.81[EUR][1000 genomes]
rs414171	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs417592	0.86[AMR][1000 genomes]
rs441516	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4429624	0.84[EUR][1000 genomes]
rs443030	0.87[AMR][1000 genomes]
rs443436	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4452323	0.81[EUR][1000 genomes]
rs4476497	0.86[AFR][1000 genomes]
rs448028	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4482663	0.82[EUR][1000 genomes]
rs4530518	0.88[EUR][1000 genomes]
rs453570	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4688693	0.82[EUR][1000 genomes]
rs4688702	0.84[EUR][1000 genomes]
rs4688703	0.84[EUR][1000 genomes]
rs4688705	0.86[AFR][1000 genomes]
rs5000953	0.84[EUR][1000 genomes]
rs61549968	0.90[EUR][1000 genomes]
rs616589	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs616689	0.82[AFR][1000 genomes]
rs6446208	0.86[AFR][1000 genomes]
rs6446210	0.91[EUR][1000 genomes]
rs6446212	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6446213	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6446215	0.84[EUR][1000 genomes]
rs6446220	0.82[AFR][1000 genomes]
rs6446222	0.80[ASN][1000 genomes]
rs66472954	0.87[EUR][1000 genomes]
rs66684483	0.87[EUR][1000 genomes]
rs66867590	0.87[EUR][1000 genomes]
rs67211895	0.87[EUR][1000 genomes]
rs67316637	0.81[EUR][1000 genomes]
rs67410403	0.83[EUR][1000 genomes]
rs6763990	0.84[EUR][1000 genomes]
rs67672341	0.87[EUR][1000 genomes]
rs6770954	0.86[EUR][1000 genomes]
rs6771348	0.86[AFR][1000 genomes]
rs6775012	0.84[EUR][1000 genomes]
rs6776224	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6778680	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67794896	0.81[EUR][1000 genomes]
rs6779819	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6783922	0.86[AFR][1000 genomes]
rs67843425	0.81[EUR][1000 genomes]
rs67895930	0.81[EUR][1000 genomes]
rs6791880	0.87[EUR][1000 genomes]
rs6794155	0.88[AFR][1000 genomes]
rs6796769	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs68096338	0.81[EUR][1000 genomes]
rs68130118	0.81[EUR][1000 genomes]
rs68191286	0.90[EUR][1000 genomes]
rs695170	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs71326944	0.90[EUR][1000 genomes]
rs71326945	0.88[EUR][1000 genomes]
rs71329007	0.83[EUR][1000 genomes]
rs71329014	0.83[EUR][1000 genomes]
rs71329017	0.87[EUR][1000 genomes]
rs71329021	0.81[EUR][1000 genomes]
rs71329023	0.81[EUR][1000 genomes]
rs728901	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73072418	0.90[EUR][1000 genomes]
rs73072438	0.89[EUR][1000 genomes]
rs73072442	0.90[EUR][1000 genomes]
rs73079191	0.81[EUR][1000 genomes]
rs73081114	0.81[EUR][1000 genomes]
rs73081144	0.81[EUR][1000 genomes]
rs745356	0.86[AFR][1000 genomes]
rs751851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611428	0.90[EUR][1000 genomes]
rs7615703	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7621650	0.83[ASN][1000 genomes]
rs7623868	0.81[EUR][1000 genomes]
rs7623976	0.81[EUR][1000 genomes]
rs7629253	0.84[EUR][1000 genomes]
rs7635666	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7639301	0.80[ASN][1000 genomes]
rs7642158	0.88[EUR][1000 genomes]
rs7645212	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7646236	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7650574	0.84[EUR][1000 genomes]
rs7652715	0.85[EUR][1000 genomes]
rs808148	0.86[AFR][1000 genomes]
rs808149	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs809454	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs813243	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs876103	0.86[AFR][1000 genomes]
rs876104	0.86[AFR][1000 genomes]
rs876105	0.86[AFR][1000 genomes]
rs900735	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs936405	0.89[EUR][1000 genomes]
rs936406	0.89[EUR][1000 genomes]
rs9682401	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9820606	0.89[ASN][1000 genomes]
rs9824444	0.86[ASN][1000 genomes]
rs9824522	0.91[ASN][1000 genomes]
rs9825535	0.91[ASN][1000 genomes]
rs9826757	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9831288	0.87[ASN][1000 genomes]
rs9839684	0.84[EUR][1000 genomes]
rs9867489	0.91[ASN][1000 genomes]
rs9868870	0.81[EUR][1000 genomes]
rs9868889	0.82[AFR][1000 genomes]
rs9869945	0.80[ASN][1000 genomes]
rs9879397	0.86[AFR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50685800-50703800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:50687000-50712000	Weak transcription	Right Atrium	heart
3	chr3:50687600-50702400	Weak transcription	Spleen	Spleen
4	chr3:50688200-50702600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:50688800-50702600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr3:50690200-50702200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:50696200-50702400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:50696400-50702800	Weak transcription	HSMM	muscle
9	chr3:50699800-50703600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:50700800-50702400	Enhancers	Placenta	Placenta
11	chr3:50701000-50702400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:50701000-50703200	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr3:50701000-50703800	Weak transcription	Hela-S3	cervix
14	chr3:50701000-50704400	Weak transcription	NHDF-Ad	bronchial

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