Variant report

Variant	rs7639301
Chromosome Location	chr3:50837991-50837992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10510754	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11712367	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11917538	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11928733	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639243	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1379873	0.80[EUR][1000 genomes]
rs1379874	0.80[EUR][1000 genomes]
rs1379875	0.80[EUR][1000 genomes]
rs1458385	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1531271	0.80[EUR][1000 genomes]
rs1598926	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1598928	0.80[EUR][1000 genomes]
rs1841067	0.80[EUR][1000 genomes]
rs1971976	0.80[ASN][1000 genomes]
rs2085582	0.80[EUR][1000 genomes]
rs2085584	0.80[EUR][1000 genomes]
rs2085585	0.80[EUR][1000 genomes]
rs2085586	0.80[EUR][1000 genomes]
rs2168865	0.80[EUR][1000 genomes]
rs2219431	0.80[EUR][1000 genomes]
rs2219432	0.80[EUR][1000 genomes]
rs2355350	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2355697	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2355700	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2608990	0.80[EUR][1000 genomes]
rs2609016	0.80[EUR][1000 genomes]
rs2609018	0.80[EUR][1000 genomes]
rs2609019	0.80[EUR][1000 genomes]
rs2609028	0.80[EUR][1000 genomes]
rs2675784	0.80[EUR][1000 genomes]
rs2675819	0.80[EUR][1000 genomes]
rs2675821	0.80[EUR][1000 genomes]
rs2675822	0.80[EUR][1000 genomes]
rs2675825	0.80[EUR][1000 genomes]
rs34848480	0.80[ASN][1000 genomes]
rs35193996	0.80[EUR][1000 genomes]
rs36057916	0.80[EUR][1000 genomes]
rs4346541	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4346542	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4447760	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4485709	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs61108141	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6446220	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6446222	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446243	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6446245	0.83[EUR][1000 genomes]
rs66472954	0.80[EUR][1000 genomes]
rs66684483	0.80[EUR][1000 genomes]
rs67211895	0.80[EUR][1000 genomes]
rs67672341	0.80[EUR][1000 genomes]
rs6769733	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6795573	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs71329017	0.80[EUR][1000 genomes]
rs7433217	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs751851	0.80[ASN][1000 genomes]
rs7614482	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7616183	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7621650	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7627266	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7638082	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7639828	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9820606	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9824444	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9824522	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9825535	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9831288	0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9832952	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9838433	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9859692	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9867489	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9869945	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9875961	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9877272	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50826400-50841200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:50834600-50838600	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links