Variant report

Variant	rs7639828
Chromosome Location	chr3:50823597-50823598
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10510754	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11712367	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11917538	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11928733	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12639243	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1458385	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1563684	0.83[AFR][1000 genomes]
rs1598926	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1824281	0.85[AFR][1000 genomes]
rs1966921	0.83[AFR][1000 genomes]
rs2086827	0.84[AFR][1000 genomes]
rs2355350	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2355697	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2355700	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4346541	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4346542	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4447760	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4485709	0.90[AMR][1000 genomes]
rs61108141	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6446213	0.84[AFR][1000 genomes]
rs6446220	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6446222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6446243	0.82[EUR][1000 genomes]
rs6446245	0.82[EUR][1000 genomes]
rs6769733	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6776224	0.86[AFR][1000 genomes]
rs6778680	0.84[AFR][1000 genomes]
rs6779819	0.86[AFR][1000 genomes]
rs6795573	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6796769	0.86[AFR][1000 genomes]
rs7433217	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7614482	0.81[EUR][1000 genomes]
rs7615703	0.86[AFR][1000 genomes]
rs7616183	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7621650	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7627266	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7638082	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7639301	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9820606	0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9824444	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9824522	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9825535	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9826757	0.86[AFR][1000 genomes]
rs9831288	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9832952	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9838433	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9859692	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9867489	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9869945	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9875961	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9877272	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50818000-50824200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr3:50819400-50825200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:50819400-50825600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr3:50821000-50825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:50821200-50827400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:50822200-50823800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:50823400-50825800	Weak transcription	Brain Anterior Caudate	brain

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