Variant report

Variant	rs2675808
Chromosome Location	chr3:50819802-50819803
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:73141458..73143069-chr3:50817283..50820282,2	K562	blood:

Variant related genes	Relation type
ENSG00000252042	Chromatin interaction
ENSG00000263786	Chromatin interaction
ENSG00000189159	Chromatin interaction

Extended variants
information (count: 260 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:260)

rs_ID	r²[population]
rs11130255	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11130263	0.87[EUR][1000 genomes]
rs11710858	0.81[EUR][1000 genomes]
rs11921011	0.87[EUR][1000 genomes]
rs12185906	0.82[AMR][1000 genomes]
rs13062018	0.84[AMR][1000 genomes]
rs13065995	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13069365	0.80[AMR][1000 genomes]
rs13072085	0.81[EUR][1000 genomes]
rs13075344	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13075377	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13079136	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13079565	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13084771	0.82[AMR][1000 genomes]
rs13085096	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13085320	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13085759	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13085827	0.82[AMR][1000 genomes]
rs13086545	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13086922	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13088041	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13088434	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13088988	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13089719	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13092418	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13093289	0.82[AMR][1000 genomes]
rs13093798	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13094785	0.82[EUR][1000 genomes]
rs13095706	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13095920	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13096264	0.80[AMR][1000 genomes]
rs13096268	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13096772	0.82[AMR][1000 genomes]
rs13097480	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13099712	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13100403	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1379873	0.82[EUR][1000 genomes]
rs1379874	0.82[EUR][1000 genomes]
rs1379875	0.82[EUR][1000 genomes]
rs1458386	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1458387	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1463496	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1463497	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1471177	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1531271	0.82[EUR][1000 genomes]
rs1563683	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1598927	0.81[EUR][1000 genomes]
rs1598928	0.82[EUR][1000 genomes]
rs17660179	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17660513	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1824280	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1841067	0.82[EUR][1000 genomes]
rs1902960	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1947607	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1966920	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1975834	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2045510	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2045511	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2061388	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2085580	0.87[EUR][1000 genomes]
rs2085582	0.82[EUR][1000 genomes]
rs2085584	0.82[EUR][1000 genomes]
rs2085585	0.82[EUR][1000 genomes]
rs2085586	0.82[EUR][1000 genomes]
rs2085587	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2085588	0.84[EUR][1000 genomes]
rs2125364	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2125366	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2125369	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2168863	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2168865	0.82[EUR][1000 genomes]
rs2168866	0.89[AMR][1000 genomes]
rs2199050	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2219431	0.82[EUR][1000 genomes]
rs2219432	0.82[EUR][1000 genomes]
rs2219433	0.81[EUR][1000 genomes]
rs2262810	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2355341	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2355692	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2355696	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2355702	0.81[EUR][1000 genomes]
rs2355705	0.87[EUR][1000 genomes]
rs2608989	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2608990	0.82[EUR][1000 genomes]
rs2608993	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2608995	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2608997	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2608999	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2609001	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2609002	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2609005	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2609006	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2609016	0.82[EUR][1000 genomes]
rs2609018	0.82[EUR][1000 genomes]
rs2609019	0.82[EUR][1000 genomes]
rs2609020	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609021	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609022	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2609024	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2609025	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2609028	0.82[EUR][1000 genomes]
rs2609035	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2609036	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2609037	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675769	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2675771	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2675772	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2675773	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2675774	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2675784	0.82[EUR][1000 genomes]
rs2675787	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675788	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675789	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675790	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675791	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675792	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675793	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675794	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675799	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675800	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675802	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2675804	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675806	0.89[EUR][1000 genomes]
rs2675809	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675810	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2675812	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2675813	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2675819	0.82[EUR][1000 genomes]
rs2675821	0.82[EUR][1000 genomes]
rs2675822	0.82[EUR][1000 genomes]
rs2675825	0.82[EUR][1000 genomes]
rs2675827	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2675828	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675829	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2675830	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675832	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675834	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675835	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675836	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2675837	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28762180	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3101107	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3106826	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34006781	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34040634	0.82[AMR][1000 genomes]
rs34048522	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34075959	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34184643	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34266990	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34307982	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34320663	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34390947	0.81[EUR][1000 genomes]
rs34456131	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34481683	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34492910	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34576538	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34602347	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34628582	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34632971	0.82[AMR][1000 genomes]
rs34640865	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34712521	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34773360	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34786937	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34836308	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34846525	0.82[AMR][1000 genomes]
rs34855107	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34866096	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34900426	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35082196	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35098074	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35121433	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35122553	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35140911	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35150418	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35170043	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35190976	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35193996	0.82[EUR][1000 genomes]
rs35273485	0.82[AMR][1000 genomes]
rs35429015	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35481031	0.84[AMR][1000 genomes]
rs35492420	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35499413	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35531616	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35566897	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35693100	0.82[AMR][1000 genomes]
rs35842302	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35875816	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36011798	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs36018544	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs36056105	0.80[AMR][1000 genomes]
rs36057916	0.82[EUR][1000 genomes]
rs36110549	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3804628	0.82[AMR][1000 genomes]
rs4131887	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4429624	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4452323	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4482663	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4530518	0.81[EUR][1000 genomes]
rs4688693	0.87[EUR][1000 genomes]
rs4688702	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4688703	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs5000953	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55785224	0.82[AMR][1000 genomes]
rs57378417	0.82[AMR][1000 genomes]
rs57642230	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57732473	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs60292376	0.82[AMR][1000 genomes]
rs60898829	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61549968	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61638760	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6446210	0.82[EUR][1000 genomes]
rs6446215	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66472954	0.82[EUR][1000 genomes]
rs66684483	0.82[EUR][1000 genomes]
rs66867590	0.82[AMR][1000 genomes]
rs67211895	0.82[EUR][1000 genomes]
rs67316637	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67410403	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67445615	0.82[AMR][1000 genomes]
rs6763779	0.83[EUR][1000 genomes]
rs67672341	0.82[EUR][1000 genomes]
rs6771085	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6775012	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67794896	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67843425	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67895930	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6791880	0.82[AMR][1000 genomes]
rs68096338	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68130118	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68191286	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71326944	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71326945	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs71329007	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71329017	0.82[EUR][1000 genomes]
rs71329021	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71329023	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71329039	0.82[AMR][1000 genomes]
rs73072418	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73072438	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73072442	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73079191	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73081114	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73081144	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7426759	0.82[AMR][1000 genomes]
rs7429035	0.82[AMR][1000 genomes]
rs7611428	0.81[EUR][1000 genomes]
rs7623868	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7623976	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7629253	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7629809	0.82[AMR][1000 genomes]
rs7642158	0.81[EUR][1000 genomes]
rs7650574	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7652715	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs936405	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs936406	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9823942	0.82[AMR][1000 genomes]
rs9839684	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9844519	0.87[EUR][1000 genomes]
rs9844618	0.81[AMR][1000 genomes]
rs9868870	0.85[EUR][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:50814800-50821400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:50816400-50820400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:50818000-50824200	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:50819400-50825200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr3:50819400-50825600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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