Variant report

Variant rs622502
Chromosome Location chr3:50645793-50645794
allele A/C/G
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:50636800-50646000 Genic enhancers Fetal Intestine Small intestine
2 chr3:50638800-50647400 Weak transcription HUES6 Cell Line embryonic stem cell
3 chr3:50639000-50648000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
4 chr3:50639400-50648000 Weak transcription Fetal Brain Female brain
5 chr3:50639600-50646800 Genic enhancers Spleen Spleen
6 chr3:50639600-50648000 Weak transcription Fetal Brain Male brain
7 chr3:50639800-50648000 Weak transcription HUVEC blood vessel
8 chr3:50639800-50648200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr3:50639800-50648200 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr3:50639800-50648200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr3:50640000-50647000 Genic enhancers Fetal Muscle Leg muscle
12 chr3:50640000-50648000 Weak transcription Brain Substantia Nigra brain
13 chr3:50640000-50648200 Weak transcription NH-A brain
14 chr3:50640200-50646200 Enhancers Fetal Heart heart
15 chr3:50640200-50647600 Weak transcription Brain Anterior Caudate brain
16 chr3:50640200-50647600 Genic enhancers Fetal Muscle Trunk muscle
17 chr3:50640400-50646200 Genic enhancers Primary monocytes fromperipheralblood blood
18 chr3:50640400-50646200 Genic enhancers Fetal Intestine Large intestine
19 chr3:50640400-50647200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
20 chr3:50640400-50648200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
21 chr3:50640400-50648200 Weak transcription Osteobl bone
22 chr3:50640600-50646000 Genic enhancers Monocytes-CD14+_RO01746 blood
23 chr3:50640600-50649200 Transcr. at gene 5' and 3' Dnd41 blood
24 chr3:50640800-50646200 Weak transcription Fetal Kidney kidney
25 chr3:50641200-50645800 Strong transcription Fetal Lung lung
26 chr3:50641200-50646600 Genic enhancers Lung lung
27 chr3:50641200-50647000 Weak transcription Small Intestine intestine
28 chr3:50641400-50646400 Strong transcription Fetal Adrenal Gland Adrenal Gland
29 chr3:50641600-50646000 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr3:50641600-50646000 Genic enhancers Pancreas Pancrea
31 chr3:50641600-50647000 Genic enhancers Gastric stomach
32 chr3:50641600-50647800 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr3:50641600-50648400 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
34 chr3:50641800-50649200 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
35 chr3:50642200-50645800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
36 chr3:50642200-50646200 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
37 chr3:50642200-50648600 Transcr. at gene 5' and 3' Primary T helper naive cells fromperipheralblood blood
38 chr3:50642200-50648600 Transcr. at gene 5' and 3' Primary T killer memory cells from peripheral blood blood
39 chr3:50642400-50648000 Transcr. at gene 5' and 3' Primary T cells from cord blood blood
40 chr3:50642600-50647400 Weak transcription iPS-18 Cell Line embryonic stem cell
41 chr3:50642600-50648400 Transcr. at gene 5' and 3' Primary T cells fromperipheralblood blood
42 chr3:50642600-50648600 Transcr. at gene 5' and 3' K562 blood
43 chr3:50642800-50647000 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
44 chr3:50642800-50647600 Transcr. at gene 5' and 3' Rectal Mucosa Donor 29 rectum
45 chr3:50642800-50648600 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
46 chr3:50643000-50646200 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Female --
47 chr3:50643000-50646800 Transcr. at gene 5' and 3' Primary T helper cells fromperipheralblood blood
48 chr3:50643000-50647000 Transcr. at gene 5' and 3' Primary T helper memory cells from peripheral blood 2 blood
49 chr3:50643000-50647400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr3:50643000-50647800 Transcr. at gene 5' and 3' Primary T helper naive cells from peripheral blood blood

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