Variant report

Variant	rs4566574
Chromosome Location	chr3:51074286-51074287
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 212 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:211)

rs_ID	r²[population]
rs10212240	0.85[ASN][1000 genomes]
rs10212250	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs10865962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11130263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11130267	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs11130273	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130274	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11130282	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs11715556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11919932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12494165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12630889	0.85[ASN][1000 genomes]
rs13060972	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13061003	0.94[CEU][hapmap]
rs13062018	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13064199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs13069365	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13079136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13079565	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap]
rs13080170	0.94[CEU][hapmap]
rs13085827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13086922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13088434	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13093289	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13093798	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13324500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1379875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1383252	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1480363	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1531271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2061951	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2085582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2219431	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2219432	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2219433	1.00[CEU][hapmap]
rs2355702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap]
rs2355934	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2355941	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs28470684	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34628582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4132022	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4244696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4244697	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4244699	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244700	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4244701	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4244702	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4244703	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4244704	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4244705	0.87[ASN][1000 genomes]
rs4263323	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4267675	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap]
rs4269109	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4286453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4289378	0.85[ASN][1000 genomes]
rs4293735	0.85[ASN][1000 genomes]
rs4301044	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4309762	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4309763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4317135	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4328835	0.85[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs4353834	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4356848	0.94[CEU][hapmap]
rs4359843	0.85[ASN][1000 genomes]
rs4367101	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4373098	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4377512	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4378999	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4390967	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4422345	0.85[ASN][1000 genomes]
rs4438692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4443210	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs4444745	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4446244	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4453876	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4464493	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4465974	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4478114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4487270	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4488874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4491946	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4505743	1.00[CEU][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4507294	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4511930	0.87[ASN][1000 genomes]
rs4511931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4511933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4528983	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4530518	1.00[CEU][hapmap]
rs4530566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4532165	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4541436	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4555554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4557193	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4568177	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4572801	0.94[CEU][hapmap]
rs4574329	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4582086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4586852	0.81[AMR][1000 genomes]
rs4586853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4589968	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4596182	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613496	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4615113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4639007	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927957	0.82[ASN][1000 genomes]
rs4927960	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927964	0.82[ASN][1000 genomes]
rs4927965	0.82[ASN][1000 genomes]
rs4927967	0.85[ASN][1000 genomes]
rs4927976	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927977	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4927978	1.00[CEU][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927979	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927980	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927982	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4927984	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4927986	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6445393	0.85[ASN][1000 genomes]
rs6445455	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6445551	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6445600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445603	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6445750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6445779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6445802	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6445843	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6446011	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6446118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6446167	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6446168	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6446243	0.94[CEU][hapmap]
rs6446245	0.94[CEU][hapmap]
rs6767329	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6768601	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6769957	0.85[ASN][1000 genomes]
rs6771085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6772197	0.94[CEU][hapmap]
rs6772664	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6775483	0.85[ASN][1000 genomes]
rs6777719	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6779658	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6787773	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6793613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6793648	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6795272	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6795573	0.94[CEU][hapmap]
rs6797368	0.85[ASN][1000 genomes]
rs6799211	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6800279	0.81[EUR][1000 genomes]
rs6803672	0.85[ASN][1000 genomes]
rs6806090	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6808206	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6809080	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6809524	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6810241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7372046	0.82[AFR][1000 genomes]
rs7427006	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7428086	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7429035	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs7433217	0.94[CEU][hapmap]
rs7610901	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7614171	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7614482	0.94[CEU][hapmap]
rs7614785	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7614881	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap]
rs7615291	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7619584	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7627266	0.94[CEU][hapmap]
rs7628533	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7629420	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629433	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7630616	0.85[ASN][1000 genomes]
rs7630730	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7638082	0.94[CEU][hapmap]
rs7638732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs7639161	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7640263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7642158	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7643781	0.89[ASN][1000 genomes]
rs7644957	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7652655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7652818	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7653451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7653539	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs922612	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9284887	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9284888	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9682672	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9713241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9758600	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs9818841	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9823942	1.00[CEU][hapmap]
rs9827072	0.80[ASN][1000 genomes]
rs9828200	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9837334	0.94[CEU][hapmap];0.80[EUR][1000 genomes]
rs9839860	0.85[ASN][1000 genomes]
rs9841339	0.85[ASN][1000 genomes]
rs9850021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9857727	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9858412	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9860862	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9865363	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9865532	0.94[CEU][hapmap]
rs9868870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9869123	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9871539	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9875961	0.94[CEU][hapmap]
rs9883739	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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