Variant report

Variant	rs7427006
Chromosome Location	chr3:51187611-51187612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 168 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:165)

rs_ID	r²[population]
rs10212250	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10865962	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11130267	1.00[JPT][hapmap]
rs11130274	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11130280	0.91[CEU][hapmap]
rs11130282	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11130286	0.91[CEU][hapmap]
rs11130290	0.91[CEU][hapmap]
rs11706571	0.91[CEU][hapmap]
rs11715556	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11919932	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs12494165	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13062018	0.86[CHB][hapmap]
rs13064199	0.86[CHB][hapmap]
rs13069365	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13085827	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13086922	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13093289	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1318649	0.91[CEU][hapmap]
rs13324500	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs1383251	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1383252	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1480357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1480358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1480360	0.91[CEU][hapmap]
rs1480362	0.92[CEU][hapmap]
rs1480363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1480364	0.91[CEU][hapmap]
rs1552072	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1552073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17051734	1.00[JPT][hapmap]
rs2061950	0.92[CEU][hapmap]
rs2061951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2170178	0.91[CEU][hapmap]
rs2219891	0.91[CEU][hapmap]
rs2355934	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2355941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2355943	0.91[CEU][hapmap]
rs2883809	0.91[CEU][hapmap]
rs3856932	0.84[CEU][hapmap]
rs4132022	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4244696	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4244697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4244704	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4263323	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4267675	0.84[JPT][hapmap];0.90[YRI][hapmap]
rs4286453	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4301044	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4309763	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs4328835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4367100	0.91[CEU][hapmap]
rs4367101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4373098	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs4377512	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4378999	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4438692	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4446244	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4453876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4475072	0.84[CEU][hapmap]
rs4478114	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4488874	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4511931	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4511933	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4528983	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4530566	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4532165	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4538365	0.92[CEU][hapmap]
rs4555554	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4557148	0.92[CEU][hapmap]
rs4560329	0.91[CEU][hapmap]
rs4566574	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4568177	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4582086	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4586853	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4589968	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4615113	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4927960	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4927970	0.92[CEU][hapmap]
rs4927983	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4974092	0.91[CEU][hapmap]
rs4974094	0.91[CEU][hapmap]
rs4974095	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4974099	0.91[CEU][hapmap]
rs4974105	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs4974108	0.91[CEU][hapmap]
rs4974109	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6445455	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6445549	0.91[CEU][hapmap]
rs6445551	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6445600	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6445601	0.91[CEU][hapmap]
rs6445604	0.91[CEU][hapmap]
rs6445611	0.91[CEU][hapmap]
rs6445620	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs6445622	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6445628	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6445717	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs6445750	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6445779	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6445802	1.00[JPT][hapmap]
rs6446011	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6446118	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6446167	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs6446168	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6768601	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6771085	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6772664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6777719	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6779658	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6784455	0.91[CEU][hapmap]
rs6787773	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6787805	0.91[CEU][hapmap]
rs6793613	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6793648	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs6795272	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs6796847	0.91[CEU][hapmap]
rs6809080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6810241	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7428086	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7429035	0.86[CHB][hapmap]
rs751075	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7611873	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7614171	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7614881	0.86[CHB][hapmap]
rs7615291	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7619584	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7625006	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7628533	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7629420	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7629433	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7630714	0.90[CEU][hapmap]
rs7630730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7634799	0.91[CEU][hapmap]
rs7638732	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7640083	0.91[CEU][hapmap]
rs7640263	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7644957	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7649069	0.91[CEU][hapmap]
rs7651141	0.92[CEU][hapmap]
rs7652655	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7652818	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7653451	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs899750	0.91[CEU][hapmap]
rs922612	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9682672	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9713241	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9758600	1.00[JPT][hapmap]
rs9827072	1.00[CEU][hapmap]
rs9828200	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9832672	0.91[CEU][hapmap]
rs9844581	0.92[CEU][hapmap]
rs9847479	0.92[CEU][hapmap]
rs9850021	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9855442	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9855454	1.00[CEU][hapmap]
rs9856566	0.92[CEU][hapmap]
rs9857727	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs9858412	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9860403	0.91[CEU][hapmap]
rs9869123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9871539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9877188	0.91[CEU][hapmap]
rs9878100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9883739	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs995543	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491647	chr3:50856276-51245158	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1005858	chr3:51090373-51444027	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv536569	chr3:51090373-51444027	Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:51168200-51210600	Weak transcription	Brain Angular Gyrus	brain
2	chr3:51182200-51197800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr3:51183000-51209600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:51183400-51206800	Weak transcription	Brain Hippocampus Middle	brain

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