Variant report

Variant	rs492858
Chromosome Location	chr3:155432229-155432230
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12486921	0.82[EUR][1000 genomes]
rs358713	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs358721	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs358724	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs358725	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs358727	0.81[AMR][1000 genomes]
rs358728	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs358732	0.82[EUR][1000 genomes]
rs358737	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs358739	0.88[ASN][1000 genomes]
rs358742	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs358747	0.91[ASN][1000 genomes]
rs358749	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs395667	0.82[EUR][1000 genomes]
rs417877	0.81[AMR][1000 genomes]
rs427139	0.82[EUR][1000 genomes]
rs500347	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62284741	0.82[EUR][1000 genomes]
rs7650414	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
2	chr3:155430600-155432800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr3:155431200-155433200	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr3:155431200-155433200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:155431400-155433200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:155431400-155433400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:155431600-155433400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:155431800-155432400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr3:155431800-155432600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr3:155431800-155433400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:155432000-155432400	Enhancers	Fetal Brain Male	brain
12	chr3:155432000-155432600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr3:155432000-155432800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr3:155432000-155432800	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:155432000-155433200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:155432200-155432400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr3:155432200-155432400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:155432200-155432400	Enhancers	Fetal Intestine Small	intestine
19	chr3:155432200-155432600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr3:155432200-155432600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr3:155432200-155432600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr3:155432200-155432600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:155432200-155432600	Enhancers	Brain Germinal Matrix	brain
24	chr3:155432200-155432600	Enhancers	Stomach Mucosa	stomach
25	chr3:155432200-155432600	Enhancers	A549	lung
26	chr3:155432200-155432600	Flanking Active TSS	HepG2	liver
27	chr3:155432200-155432800	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr3:155432200-155432800	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr3:155432200-155433200	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links