Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13076587	0.81[AMR][1000 genomes]
rs13079863	0.81[AMR][1000 genomes]
rs13084995	0.81[AMR][1000 genomes]
rs13089059	0.81[AMR][1000 genomes]
rs34810038	0.81[AMR][1000 genomes]
rs358713	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs358721	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs358724	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs358725	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs358727	0.84[AMR][1000 genomes]
rs358737	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs358742	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs358747	0.83[ASN][1000 genomes]
rs358749	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs358898	0.81[AMR][1000 genomes]
rs358912	0.81[AMR][1000 genomes]
rs386867	0.81[AMR][1000 genomes]
rs417877	0.83[AMR][1000 genomes]
rs492858	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs500347	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7650414	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv829763	chr3:155417552-155470079	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155412600-155437400	Weak transcription	Pancreas	Pancrea
2	chr3:155413800-155432000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:155420200-155432200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr3:155422200-155427800	Weak transcription	Fetal Intestine Small	intestine
5	chr3:155423000-155431200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:155423200-155430200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr3:155423200-155431400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:155423200-155431400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:155423200-155432200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:155423400-155431200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr3:155423600-155427400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:155423600-155430600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:155423600-155431000	Weak transcription	HepG2	liver
14	chr3:155426000-155428800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:155426400-155431800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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