Variant report

Variant	rs13079863
Chromosome Location	chr3:155369245-155369246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1005736	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1007920	0.81[ASN][1000 genomes]
rs10936013	0.85[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12486000	0.81[CHB][hapmap];0.89[JPT][hapmap];0.82[AMR][1000 genomes]
rs12488043	0.81[ASN][1000 genomes]
rs12488087	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12490748	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs12493067	0.81[CHB][hapmap];0.89[JPT][hapmap]
rs13076587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082287	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs13084995	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13087389	0.86[ASN][1000 genomes]
rs13089059	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13095140	0.81[ASN][1000 genomes]
rs1519532	0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs1519533	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1519534	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1519535	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs1568360	0.81[ASN][1000 genomes]
rs168601	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs173384	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1835212	0.89[JPT][hapmap]
rs1879090	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1879091	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1879092	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2203886	0.86[ASN][1000 genomes]
rs2222275	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2435194	0.85[JPT][hapmap]
rs34810038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs358704	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs358706	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs358707	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs358708	0.85[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs358710	0.81[JPT][hapmap]
rs358712	0.85[JPT][hapmap]
rs358727	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs358728	0.81[AMR][1000 genomes]
rs358896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs358897	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs358898	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs358899	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs358902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs358903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs358904	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs358905	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs358906	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs358910	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs358911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs358912	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs359541	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs359543	0.90[CHB][hapmap];0.82[JPT][hapmap]
rs359545	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs359546	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs359560	0.89[CHB][hapmap];0.90[JPT][hapmap]
rs359567	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs378905	0.85[JPT][hapmap]
rs386867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs392521	0.85[JPT][hapmap]
rs394419	0.85[JPT][hapmap]
rs407212	0.84[ASN][1000 genomes]
rs4083041	0.86[CEU][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs412664	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs417877	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs426069	0.86[ASN][1000 genomes]
rs430008	0.85[JPT][hapmap]
rs446716	0.85[JPT][hapmap]
rs448062	0.85[JPT][hapmap]
rs4679748	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs498378	0.90[CHB][hapmap];0.89[JPT][hapmap]
rs592982	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs597718	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs60592119	0.81[ASN][1000 genomes]
rs629698	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs6441000	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs6441006	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67428377	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6772682	0.81[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6777741	0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs67955071	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6808257	0.81[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs687462	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7428196	0.83[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7645831	0.83[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155357400-155379000	Weak transcription	Gastric	stomach
2	chr3:155364800-155369600	Weak transcription	A549	lung
3	chr3:155365400-155375000	Weak transcription	Fetal Thymus	thymus
4	chr3:155365400-155375000	Weak transcription	Thymus	Thymus
5	chr3:155366600-155379000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:155366600-155379000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr3:155366800-155369600	Weak transcription	HepG2	liver
8	chr3:155367400-155369600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:155367400-155376800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:155368600-155370600	Enhancers	Stomach Mucosa	stomach
11	chr3:155369000-155369800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr3:155369000-155370400	Enhancers	Fetal Lung	lung
13	chr3:155369200-155370200	Enhancers	Cortex derived primary cultured neurospheres	brain

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