Variant report

Variant	rs7428196
Chromosome Location	chr3:155384770-155384771
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155383548..155385347-chr3:155462501..155464169,2	K562	blood:

Variant related genes	Relation type
ENSG00000114805	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs13076587	0.84[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs13079863	0.83[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs13084995	0.88[ASN][1000 genomes]
rs13089059	0.83[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs16825324	0.83[EUR][1000 genomes]
rs1835212	0.82[CHB][hapmap];0.85[CHD][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs1879090	0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1879091	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs1879092	0.87[ASN][1000 genomes]
rs2222275	0.86[JPT][hapmap]
rs2435194	0.92[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs2680881	0.81[EUR][1000 genomes]
rs2680882	0.81[EUR][1000 genomes]
rs34810038	0.86[ASN][1000 genomes]
rs358704	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs358706	0.96[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs358707	0.96[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs358708	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs358709	0.83[EUR][1000 genomes]
rs358710	0.92[CEU][hapmap];0.87[CHB][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs358711	0.96[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs358712	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs358727	0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs358896	0.84[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs358897	0.81[ASN][1000 genomes]
rs358898	0.87[ASN][1000 genomes]
rs358899	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs358902	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs358903	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs358905	0.91[JPT][hapmap];0.81[ASN][1000 genomes]
rs358906	0.81[ASN][1000 genomes]
rs358910	0.87[ASN][1000 genomes]
rs358911	0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs358912	0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs358913	0.85[EUR][1000 genomes]
rs370157	0.82[EUR][1000 genomes]
rs378905	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs384412	0.83[EUR][1000 genomes]
rs386867	0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs387885	0.81[EUR][1000 genomes]
rs392521	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs393081	0.95[CEU][hapmap];0.83[CHB][hapmap];0.83[EUR][1000 genomes]
rs394419	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs397231	0.81[EUR][1000 genomes]
rs402201	0.91[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs407212	0.93[ASN][1000 genomes]
rs407217	0.83[EUR][1000 genomes]
rs4083041	0.88[ASN][1000 genomes]
rs412664	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs414126	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs417877	0.85[ASN][1000 genomes]
rs421072	0.83[EUR][1000 genomes]
rs426069	0.96[ASN][1000 genomes]
rs429143	0.83[EUR][1000 genomes]
rs430008	0.92[CEU][hapmap];0.86[CHB][hapmap];0.82[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs446716	0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs448062	0.92[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs6441006	0.88[ASN][1000 genomes]
rs6777741	0.86[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs67955071	0.80[ASN][1000 genomes]
rs7644902	0.82[EUR][1000 genomes]
rs7645831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9840061	0.84[CEU][hapmap]
rs9840234	0.83[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009618	chr3:155370034-155492177	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155378800-155385400	Enhancers	Fetal Intestine Large	intestine
2	chr3:155381200-155386200	Enhancers	Fetal Intestine Small	intestine
3	chr3:155382800-155385200	Enhancers	Stomach Mucosa	stomach
4	chr3:155383400-155385000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:155383400-155385200	Enhancers	Duodenum Mucosa	Duodenum
6	chr3:155383400-155385600	Weak transcription	Brain Anterior Caudate	brain
7	chr3:155383400-155387000	Enhancers	HepG2	liver
8	chr3:155383400-155390200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:155383400-155393800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:155383400-155394000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:155383400-155395800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:155383600-155394000	Weak transcription	Pancreas	Pancrea
13	chr3:155384000-155385200	Enhancers	A549	lung
14	chr3:155384600-155384800	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr3:155384600-155384800	Enhancers	Small Intestine	intestine

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